Phylogenetics

Phylogenetics

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Phylogenetics is the reconstruction and analysis of trees and networks to describe and understand the evolution of species, populations and individuals. It is widely used in molecular biology and other areas of classification (such as linguistics), and has both led to and benefited from the developm…

Cambridge University


    • Jun 28, 2011 LATEST EPISODE
    • infrequent NEW EPISODES
    • 31m AVG DURATION
    • 126 EPISODES


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    Search for episodes from Phylogenetics with a specific topic:

    Latest episodes from Phylogenetics

    Estimating ultra-large phylogenies and alignments

    Play Episode Listen Later Jun 28, 2011 56:13


    Warnow, T (University of Texas at Austin) Friday 24 June 2011, 11:30-12:30

    texas large estimating alignments t university
    The combinatorics of distance-based tree inference

    Play Episode Listen Later Jun 28, 2011 17:50


    Pardi, F (CNRS) Friday 24 June 2011, 10:40-11:00

    tree distance inference pardi combinatorics
    Assessing the limits of phylogenomics: can too much data be a bad thing?

    Play Episode Listen Later Jun 27, 2011 64:29


    Bininda-Emonds, O (Carl von Ossietzky Universität Oldenburg) Friday 24 June 2011, 09:00-10:00

    data limits assessing bad things ossietzky universit
    Stochastic Errors vs. Modeling Errors in Distance Based Phylogenetic Reconstructions

    Play Episode Listen Later Jun 27, 2011 20:34


    Doerr, D (Bielefeld ) Friday 24 June 2011, 10:20-10:40

    distance modeling errors doerr stochastic reconstructions phylogenetics
    Integrative analysis if environmental sequences

    Play Episode Listen Later Jun 27, 2011 60:47


    Huson, D (University of Tubingen) Thursday 23 June 2011, 14:00-15:00

    environmental integrative sequences huson
    Mammalian phylogeny reveals recent diversi cation rate shifts

    Play Episode Listen Later Jun 27, 2011 25:01


    Stadler, T (ETH Zürich) Thursday 23 June 2011, 12:10-12:30

    shifts diversi stadler cation mammalian phylogeny
    A generalization of Stirling numbers and distribution of phylogenetic trees

    Play Episode Listen Later Jun 27, 2011 17:17


    Czabarka, E (South Carolina) Thursday 23 June 2011, 11:50-12:10

    numbers trees distribution stirling generalization phylogenetics
    A Lie algebraic classification of continuous-time Markov models

    Play Episode Listen Later Jun 27, 2011 22:34


    Sumner, J (Tasmania) Thursday 23 June 2011, 11:30-11:50

    models continuous classification sumner markov algebraic
    Tree reconciliations: beyond the LCA mapping

    Play Episode Listen Later Jun 27, 2011 19:06


    Wu, T (National University of Singapore) Thursday 23 June 2011, 10:40-11:00

    tree mapping wu
    Coalescent-based Species Tree Inference from Gene Tree Topologies Under Incomplete Lineage Sorting by Maximum Likelihood

    Play Episode Listen Later Jun 27, 2011 17:54


    Wu, Y (Connecticut) Thursday 23 June 2011, 10:20-10:40

    tree maximum species sorting wu lineage incomplete likelihood inference
    Speciation & Extinction Rate Estimation from Phylogenetic Trees

    Play Episode Listen Later Jun 27, 2011 22:15


    Hordijk, W (Lausanne) Thursday 23 June 2011, 10:00-10:20

    trees extinction estimation speciation phylogenetics hordijk
    Trees as representations of evolutionary information worth keeping

    Play Episode Listen Later Jun 27, 2011 59:54


    Mooers, A (Simon Fraser University) Thursday 23 June 2011, 09:00-10:00

    trees evolutionary representations
    Are there alternatives to handling site-to-site rate variation in evolutionary characters

    Play Episode Listen Later Jun 27, 2011 66:53


    McInerney, JO (National University of Ireland) Wednesday 22 June 2011, 16:00-17:00

    characters alternatives evolutionary variation mcinerney
    An empirical study of the effect of sequence alignment on phylogenetic analysis

    Play Episode Listen Later Jun 27, 2011 20:41


    Blackburne, B (Manchester) Wednesday 22 June 2011, 15:00-15:20

    study empirical phylogenetics blackburne sequence alignment
    Modelling protein evolution

    Play Episode Listen Later Jun 27, 2011 57:39


    Gascuel, O (CNRS) Wednesday 22 June 2011, 14:00-15:00

    evolution protein modelling
    Sequence Classification using Reference Taxonomies

    Play Episode Listen Later Jun 24, 2011 63:44


    Valiente, G (Technical University of Catalonia) Wednesday 22 June 2011, 11:30-12:30

    sequence classification valiente taxonomy
    Evaluating the goodness of fit between a phylogenetic model and an alignment

    Play Episode Listen Later Jun 24, 2011 57:49


    von Haeseler, A (MFPL, Vienna) Wednesday 22 June 2011, 09:00-10:00

    model goodness alignment evaluating phylogenetics
    Phylodynamic inference - accounting for the interaction of evolutionary and ecological processes

    Play Episode Listen Later Jun 24, 2011 15:40


    Kühnert, D (Auckland) Wednesday 22 June 2011, 10:40-11:00

    accounting processes interaction evolutionary ecological inference
    Genome sequencing of Leishmania donovani clinical lines reveals dynamic phylogenetic variation

    Play Episode Listen Later Jun 24, 2011 21:10


    Downing, T (Wellcome Trust Sanger Institute) Wednesday 22 June 2011, 10:00-10:20

    lines dynamic clinical variation downing genome sequencing phylogenetics leishmania
    New methods of identifying fast-evolving sites in aligned sequence data

    Play Episode Listen Later Jun 24, 2011 24:42


    Jermiin, L (CSIRO Ecosystem Sciences (CES)) Tuesday 21 June 2011, 16:50-17:10

    data identifying evolving sites aligned sequence new methods
    Principal components analysis in tree space

    Play Episode Listen Later Jun 24, 2011 19:26


    Nye, T (Newcastle) Tuesday 21 June 2011, 16:30-16:50

    space tree principal nye components
    Modeling the Evolutionary Dynamics of CRISPR spacers

    Play Episode Listen Later Jun 24, 2011 19:41


    Kupczok, A (IST Austria) Tuesday 21 June 2011, 16:10-16:30

    dynamics modeling crispr evolutionary spacers
    Corrections to a class of methods for inferring species trees from gene trees

    Play Episode Listen Later Jun 24, 2011 15:56


    Jewett, E (Michigan) Tuesday 21 June 2011, 15:50-16:10

    class trees methods species corrections jewett inferring
    Phylogenies from DArTs: A stochastic Dollo proces with censored data

    Play Episode Listen Later Jun 23, 2011 54:29


    Holland, BR (Massey) Tuesday 21 June 2011, 14:00-15:00

    data holland censored darts proces stochastic
    Phylogenetic trees and k-dissimilarity maps

    Play Episode Listen Later Jun 23, 2011 20:58


    Herrmann, S (East Anglia) Tuesday 21 June 2011, 15:30-15:50

    trees maps herrmann phylogenetics dissimilarity
    Reconstructing the parameters of a network from its tree-average distances

    Play Episode Listen Later Jun 23, 2011 22:34


    Willson, S (Iowa State) Tuesday 21 June 2011, 12:10-12:30

    network tree average reconstructing parameters distances willson
    Visualizing reticulate evolution with planar split networks

    Play Episode Listen Later Jun 23, 2011 17:26


    Spillner, A (Ernst-Moritz-Arndt-Universität Greifswald) Tuesday 21 June 2011, 11:50-12:10

    evolution split networks visualizing planar
    Tanglegrams for Rooted Phylogenetic Trees and Networks

    Play Episode Listen Later Jun 23, 2011 20:34


    Scornavacca, C (Tübingen) Tuesday 21 June 2011, 11:30-11:50

    trees rooted networks c t phylogenetics
    On the elusivity of softwired clusters

    Play Episode Listen Later Jun 23, 2011 18:43


    Kelk, SM (CWI) Tuesday 21 June 2011, 10:20-10:40

    clusters kelk
    Reconciling Gene Trees in the Presence of Incomplete Lineage Sorting and Hybridization

    Play Episode Listen Later Jun 23, 2011 59:07


    Nakhleh, L (Rice) Tuesday 21 June 2011, 09:00-10:00

    presence trees sorting lineage reconciling incomplete hybridization
    Quartets and unrooted phylogenetic networks

    Play Episode Listen Later Jun 23, 2011 19:41


    Gambette, P (la Méditerranée (Aix-Marseille II)) Tuesday 21 June 2011, 10:00-10:20

    networks quartets phylogenetics
    Quantifying diversity and abundance in soil microbial communities from high-throughput sequence data

    Play Episode Listen Later Jun 23, 2011 26:43


    Loza, E (Rothamsted Research) Monday 20 June 2011, 16:50-17:10

    data diversity abundance communities soil sequence quantifying microbial loza throughput
    Concordance between species trees and gene trees with multiple mergers of ancestral lineages

    Play Episode Listen Later Jun 23, 2011 17:57


    Eldon, B (Oxford) Monday 20 June 2011, 16:30-16:50

    trees species ancestral mergers eldon concordance lineages
    Exploring Treespace

    Play Episode Listen Later Jun 23, 2011 21:45


    St John, K (CUNY) Monday 20 June 2011, 16:10-16:30

    st john
    Identifying Lateral Transfers with Neighbor-Nets

    Play Episode Listen Later Jun 23, 2011 17:04


    Thuillard, M Monday 20 June 2011, 15:50-16:10

    identifying neighbor nets transfers lateral
    Metrics on Multi-labeled Trees: Interrelationships and Diameter Bounds

    Play Episode Listen Later Jun 23, 2011 20:11


    Huber, K (East Anglia) Monday 20 June 2011, 15:30-15:50

    trees metrics huber bounds labeled diameter interrelationships
    On the Complexity of the Quartet Challenge

    Play Episode Listen Later Jun 23, 2011 20:44


    Linz, S (Tübingen) Monday 20 June 2011, 12:10-12:30

    complexity quartets linz st.
    Revisiting the question how many characters are needed to reconstruct the true tree

    Play Episode Listen Later Jun 23, 2011 14:22


    Fischer, M (CIBIV, Vienna) Monday 20 June 2011, 11:50-12:10

    tree characters revisiting fischer reconstruct
    The Complexity of the uSPR distance

    Play Episode Listen Later Jun 23, 2011 23:17


    Bonet, ML (Politècnica de Catalunya) Monday 20 June 2011, 11:30-11:50

    distance complexity bonet
    Recent Progress on Multi-State Perfect Phylogeny (Compatibility) Problems

    Play Episode Listen Later Jun 23, 2011 63:36


    Gusfield, DM (University of California, Davis) Monday 20 June 2011, 10:00-11:00

    california progress compatibility phylogeny
    A genealogical approach to studying asexuality

    Play Episode Listen Later Jan 16, 2008 19:02


    Song, Y (California) Friday 21 December 2007, 10:40-11:00 PLGw03 - Future Directions in Phylogenetic Methods and Models

    song models studying asexuality genealogical
    Lineage sorting and multi-species coalescent models

    Play Episode Listen Later Jan 16, 2008 60:29


    Rosenberg, N (Michigan) Friday 21 December 2007, 09:00-10:00 PLGw03 - Future Directions in Phylogenetic Methods and Models

    models species rosenberg sorting lineage

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