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Today, you'll learn about the massive new study that suggests cell phones don't cause cancer as some feared, a fluffy orange fungus that could one day turn your food waste into dinner, and how scientists are helping crocodiles refine their tastes. Phones & Brain Cancer “Mobile phones are not linked to brain cancer, according to a major review of 28 years of research.” by Sarah Loughran & Ken Karipidis. 2024. “Brain tumour risk in relation to mobile telephone use: results of the INTERPHONE international case-control study.” International Journal of Epidemiology. 2010. “Mobile phone use and incidence of brain tumour histological types, grading or anatomical location: a population-based ecological study.” by Ken Karipidis, et al. 2018. Fungus Food “A fluffy, orange fungus could transform food waste into tasty dishes.” by Anna Gibbs. 2024. “Neurospora intermedia from a traditional fermented food enables waste-to-food conversion.” by Vayu Maini Rekdal, et al. 2024. Crocs & Toads “Taste aversion training can educate free-ranging crocodiles against toxic invaders.” by Georgia Ward-Fear, et al. 2024. “Introduction of cane toads.” National Museum of Australia. 2023. Follow Curiosity Daily on your favorite podcast app to get smarter with Calli and Nate — for free! Still curious? Get exclusive science shows, nature documentaries, and more real-life entertainment on discovery+! Go to https://discoveryplus.com/curiosity to start your 7-day free trial. discovery+ is currently only available for US subscribers. Hosted on Acast. See acast.com/privacy for more information.
W najnowszym odcinku Magazynu Outriders: Pakistan, Mjanma, Senegal – konflikty wewnętrzne i walka o autonomię Zrównoważone odżywianie: nowa czekolada i grzyb Neurospora intermedia AI skrywająca rasizm oraz dziennikarze-awatary przeciwko Maduro Miłość – gdzie jej szukać w mózgu i dlaczego jest silniejsza od zagrożeń Meksyk, Kolumbia i RPA vs kartele narkotykowe i mafie budowlane Gatunki inwazyjne: myszy na wyspie Marion i tilapia wielkogłowa w Tajlandii Korupcja w najwyższych kręgach władzy w Chile i Kalifornii Chińscy medycy w Kapsztadzie, roboty rehabilitacyjne i przełomowe badanie COVID-19
Link to bioRxiv paper: http://biorxiv.org/cgi/content/short/2020.10.27.357517v1?rss=1 Authors: Courtney, A. J., Lewis, Z. A. Abstract: Neurospora crassa has been an important model organism for molecular biology and genetics for over 60 years. N. crassa has a complex life cycle, with over 28 distinct cell types and is capable of transcriptional responses to many environmental conditions including nutrient availability, temperature, and light. To quantify variation in N. crassa gene expression, we analyzed public expression data from 97 conditions and calculated the Shannon Entropy value for Neurospora's approximately 11,000 genes. Entropy values can be used to estimate the variability in expression for a single gene over a range of conditions and be used to classify individual genes as constitutive or condition-specific. Shannon entropy has previously been used measure the degree of tissue specificity of multicellular plant or animal genes. We use this metric here to measure variable gene expression in a microbe and provide this information as a resource for the N. crassa research community. Finally, we demonstrate the utility of this approach by using entropy values to identify genes with constitutive expression across a wide range of conditions and to identify genes that are activated exclusively during sexual development. Copy rights belong to original authors. Visit the link for more info
In this episode of the Epigenetics Podcast, we caught up with Sir Adrian Bird, Buchanan Professor of Genetics at the University of Edinburgh to talk about his work on CpG islands, DNA methylation, and the role of DNA methylation in human diseases. Adrian Bird has been a pioneer in studying the CpG dinucleotide sequence. The CpG dinucleotide is distributed genome-wide and has several properties expected of a genomic signaling module. The extent to which CpG signaling is involved in development, differentiation, and disease is only just beginning to emerge. Adrian Bird's work indicates that proteins that bind methylated CpGs recruit chromatin modifying enzymes to reinforce gene silencing, whereas proteins that bind unmethylated CpGs promote the formation of active chromatin. These results suggest that CpG acts as a global modulator of genome activity. One of the best-studied methyl-CpG binding proteins is MeCP2, which is almost as abundant as histones in neurons. MeCP2-deficient children acquire serious neurological disorders, in particular the autism spectrum disorder Rett Syndrome. Due to its monogenic origin, Rett Syndrome has become one of the most experimentally accessible of such disorders and studies of MeCP2 offer a golden opportunity to understand its complex pathology at a molecular level. Adrian Bird created a mouse model of Rett Syndrome which has accelerated the understanding of this disorder, most notably by demonstrating that advanced Rett-like symptoms in mice can be “cured” by reintroducing a functional MeCP2 gene. In this interview, podcast host Stefan Dillinger and Adrian discuss CpG islands, DNA methylation, and how the discovery of MeCP2 lead to the discovery of a possible treatment of Rett Syndrome. References S. Lindsay, A. P. Bird (1987) Use of restriction enzymes to detect potential gene sequences in mammalian DNA (Nature) DOI: 10.1038/327336a0 R. R. Meehan, J. D. Lewis, … A. P. Bird (1989) Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs (Cell) DOI: 10.1016/0092-8674(89)90430-3 R. R. Meehan, J. D. Lewis, A. P. Bird (1992) Characterization of MeCP2, a vertebrate DNA binding protein with affinity for methylated DNA (Nucleic Acids Research) DOI: 10.1093/nar/20.19.5085 Eric U. Selker, Nikolaos A. Tountas, … Michael Freitag (2003) The methylated component of the Neurospora crassa genome (Nature) DOI: 10.1038/nature01564 Robert J. Klose, Shireen A. Sarraf, … Adrian P. Bird (2005) DNA binding selectivity of MeCP2 due to a requirement for A/T sequences adjacent to methyl-CpG (Molecular Cell) DOI: 10.1016/j.molcel.2005.07.021 Jacky Guy, Jian Gan, … Adrian Bird (2007) Reversal of neurological defects in a mouse model of Rett syndrome (Science (New York, N.Y.)) DOI: 10.1126/science.1138389 Daniel H. Ebert, Harrison W. Gabel, … Michael E. Greenberg (2013) Activity-dependent phosphorylation of MeCP2 threonine 308 regulates interaction with NCoR (Nature) DOI: 10.1038/nature12348 Contact Active Motif on Twitter Epigenetics Podcast on Twitter Active Motif on Linked-In Active Motif on Facebook eMail: podcast@activemotif.com
Never look at a solar eclipse. Unless you're wearing badass solar eclipse glasses and taking cool photos. Night Sky Pix sent us an article about photographing the upcoming solar eclipse, and it's so in depth we'll need to get it back from the Challenger Deep. So, if you live in the right places, get your camera and your solar filters and get snapping.SimRefinery is the least well known Sim game of all time. That's because Maxis never actually finished it and it's been sitting in a box for decades. But now it's been temporarily released on Archive.org and around 20 000 people have downloaded it. SimRefinery was a training simulation commissioned by Chevron and designed to help introduce refinery workers and company staff learn about the operations of their facilities.DJ is cautiously excited about Promised Neverland, an Amazon live action remake of the anime with the same name. A knock off version of the Eloi from The Time Machine find out what they're being kept for and try to escape. Don't get your hopes up though, what are the chances someone will actually make a good live action anime adaptation?This week, Professor tries to drive across America in Overland and DJ takes a time machine to a medieval battle royale.Upcoming annual Solar eclipse and how to take photos of it- https://www.timeanddate.com/eclipse/solar/2020-june-21- https://nightskypix.com/how-to-photograph-a-solar-eclipse/Unreleased SimRefinery prototype from the shadows of history-https://arstechnica.com/gaming/2020/06/a-lost-maxis-sim-game-has-been-discovered-by-an-ars-reader-uploaded-for-all/- https://obscuritory.com/sim/when-simcity-got-serious/Promised Neverland now a live action series on Amazon-https://variety.com/2020/tv/news/promised-neverland-live-action-series-in-development-at-amazon-1234629626/Games PlayedProfessor– Overland – https://store.steampowered.com/app/355680/Overland/Rating: 3.5/5DJ– Shadow Arena – https://store.steampowered.com/app/1226470/Shadow_Arena/Rating: 3/5Other topics discussedSimpsons Solar Eclipse!! from the episode Gone Maggie Gone (Marge takes a peek at the solar eclipse, which blinds her)- https://www.youtube.com/watch?v=-sE0haQuvp0Pinhole Camera (A pinhole camera is a simple camera without a lens but with a tiny aperture (the so-called pinhole) – effectively a light-proof box with a small hole in one side.Light from a scene passes through the aperture and projects an inverted image on the opposite side of the box, which is known as the camera obscura effect.)- https://en.wikipedia.org/wiki/Pinhole_cameraCamera Obscura (Camera obscura (plural camerae obscurae or camera obscuras, from Latin camera obscūra, “dark chamber”), also referred to as pinhole image, is the natural optical phenomenon that occurs when an image of a scene at the other side of a screen (or, for instance, a wall) is projected through a small hole in that screen as a reversed and inverted image (left to right and upside down) on a surface opposite to the opening.)- https://en.wikipedia.org/wiki/Camera_obscuraDisposable Camera (A disposable or single-use camera is a simple box camera meant to be used once. Most use fixed-focus lenses. Some are equipped with an integrated flash unit, and there are even waterproof versions for underwater photography.)- https://en.wikipedia.org/wiki/Disposable_camera4–5 July 2020 Penumbral Lunar Eclipse (The Moon may turn slightly darker than a usual Full Moon for those in much of North and South America, and Africa during the maximum phase of this penumbral lunar eclipse.)- https://www.timeanddate.com/eclipse/lunar/2020-july-5SimRefinery (SimRefinery was a computer management simulation game designed to simulate Chevron's Richmond refinery operation. It was developed by the Maxis Business Simulations division of Maxis in 1993.)- https://en.wikipedia.org/wiki/SimRefineryInternet Archive (The Internet Archive is an American digital library with the stated mission of "universal access to all knowledge." It provides free public access to collections of digitized materials, including websites, software applications/games, music, movies/videos, moving images, and millions of books. In addition to its archiving function, the Archive is an activist organization, advocating a free and open Internet.)- https://en.wikipedia.org/wiki/Internet_ArchiveOpenTTD (OpenTTD is a business simulation game in which players try to earn money via transporting passengers and freight by road, rail, water and air. It is an open-source remake and expansion of the 1994 Chris Sawyer video game Transport Tycoon Deluxe.- https://en.wikipedia.org/wiki/OpenTTD- https://www.openttd.org/Days of Thunder (Days of Thunder is a 1990NASCAR racing simulation video game loosely based on the 1990 movie Days of Thunder. Oberth's version was recovered from floppy discs in 2020 after his death by the Video Game History Foundation and its source code was made available in June 2020 with permission of Oberth's estate.)- https://en.wikipedia.org/wiki/Days_of_Thunder_(1990_video_game)- https://gamehistory.org/days-of-thunder-nes-unreleased/A Super Mario 64 decompilation- https://github.com/n64decomp/sm64Maxis (Maxis is an American video game developer and a division of Electronic Arts (EA). The studio was founded in 1987 by Will Wright and Jeff Braun, and acquired by EA in 1997. Maxis is best known for its simulation games, including The Sims, Spore and SimCity.)- https://en.wikipedia.org/wiki/MaxisSpore (Spore is a 2008 life simulation real-time strategy God game developed by Maxis, published by Electronic Arts and designed by Will Wright, and was released for Microsoft Windows and Mac OS X.)- https://en.wikipedia.org/wiki/Spore_(2008_video_game)The Office (American TV Series) (The Office is an American mockumentary sitcom television series that depicts the everyday lives of office employees in the Scranton, Pennsylvania, branch of the fictional Dunder Mifflin Paper Company. It is an adaptation of the 2001-2003 BBC series of the same name, being adapted for American television by Greg Daniels, a veteran writer for Saturday Night Live, King of the Hill, and The Simpsons.)- https://en.wikipedia.org/wiki/The_Office_(American_TV_series)Red Dwarf (American version) (a pilot episode for an American version (known as Red Dwarf USA) was produced through Universal Studios with the intention of broadcasting on NBC in 1992.)- https://en.wikipedia.org/wiki/Red_Dwarf#U.S._versionThe I.T. Crowd (American version) (An American version of The IT Crowd was almost aired by NBC in 2007–08. It starred Richard Ayoade reprising his role as Moss, with Joel McHale as Roy, Jessica St. Clair as Jen and Rocky Carroll as Denholm. A third attempt at an NBC remake was confirmed in January 2018.)- https://en.wikipedia.org/wiki/The_IT_Crowd#American_versionsNetflix’s live-action adaptation of Cowboy Bebop will tone down Faye’s revealing costume from the anime.-https://screenrant.com/live-action-cowboy-bebop-show-faye-costume-changes/A Quiet Place (A Quiet Place is a 2018 American post-apocalypticscience fiction horror film co-written, directed by and starring John Krasinski. Written by Bryan Woods, Scott Beck and Krasinski, the plot revolves around a father (Krasinski) and a mother (Emily Blunt) who struggle to survive and raise their children in apost-apocalyptic world inhabited by blind extraterrestrial creatures with an acute sense of hearing.)- https://en.wikipedia.org/wiki/A_Quiet_Place_(film)Arachnids (Starship Troopers monster) (The Arachnids (more commonly known as Bugs, and Archies) are a hostile alien species that have conquered many planets across space.)- https://starshiptroopers.fandom.com/wiki/ArachnidNicholas Cage (Nicolas Kim Coppola, known professionally as Nicolas Cage, is an American actor and filmmaker. To avoid the appearance of nepotism as Coppola's nephew, he changed his name early in his career to Nicolas Cage, inspired in part by the Marvel Comics superhero Luke Cage.)- https://en.wikipedia.org/wiki/Nicolas_CageLuna Park Sydney (Luna Park Sydney is a heritage-listed amusement park located at 1 Olympic Drive, Milsons Point, North Sydney Council, New South Wales, Australia, on the northern shore of Sydney Harbour. The amusement park is owned by the Luna Park Reserve Trust, an agency of the Government of New South Wales, and was added to the New South Wales State Heritage Register on 5 March 2010.)- https://en.wikipedia.org/wiki/Luna_Park_SydneyLuna Park Ghost Train and the legend of the Devil-Horned Man-https://cdn.mamamia.com.au/wp/wp-content/uploads/2019/11/19135844/luna-park-feature.jpg- https://www.mamamia.com.au/luna-park-ghost-train/XR SEQ Podcast (TNC Podcast)- https://thatsnotcanon.com/xrseqpodcastShout Outs9 June 1909 – Alice Huyler Ramsey, 22-year-old housewife from Hackensack, New Jersey, becomes the 1st woman to drive across the US, in a Maxwell 30, drives 3,800 miles from Manhattan to San Francisco in 59 days - https://en.wikipedia.org/wiki/Alice_Huyler_Ramsey#Transcontinental_driveOn June 9, 1909, Alice Huyler Ramsey 22-year-old housewife and mother began a 3,800-mile journey from Hell Gate in Manhattan, New York, to San Francisco, California, in a green, four-cylinder, 30-horsepower Maxwell DA. On her 59-day trek she was accompanied by two older sisters-in-law and 19 year-old friend Hermine Jahns, none of whom could drive a car. They arrived amid great fanfare on August 7, although about three weeks later than originally planned. The group of women used maps from the American Automobile Association to make the journey. Only 152 of the 3,600 miles (244 of the 5,767 kilometers) that the group traveled were paved. Over the course of the drive, Ramsey changed 11 tires, cleaned the spark plugs, repaired a broken brake pedal and had to sleep in the car when it was stuck in mud. The women mostly navigated by using telephone poles, following the poles with more wires in hopes that they would lead to a town. Along the way, they crossed the trail of a manhunt for a killer in Nebraska, Ramsey received a case of bedbugs from a Wyoming hotel, and in Nevada they were surrounded by a Native American hunting party with bows and arrows drawn. Ramsey was named the "Woman Motorist of the Century" by AAA in 1960.9 June 2020 – Kathy Sullivan first American woman to walk in space has become the first woman to reach the deepest known spot in the ocean - https://www.nytimes.com/2020/06/08/science/challenger-deep-kathy-sullivan-astronaut.htmlOn Sunday, Kathy Sullivan, 68, an astronaut and oceanographer, emerged from her 35,810-foot dive to the Challenger Deep, according to EYOS Expeditions, a company coordinating the logistics of the mission. This also makes Dr. Sullivan the first person to both walk in space and to descend to the deepest point in the ocean. The Challenger Deep is the lowest of the many seabed recesses that crisscross the globe. Dr. Sullivan and Victor L. Vescovo, an explorer funding the mission, spent about an hour and a half at their destination, nearly seven miles down in a muddy depression in the Mariana Trench, which is about 200 miles southwest of Guam. “As a hybrid oceanographer and astronaut this was an extraordinary day, a once in a lifetime day, seeing the moonscape of the Challenger Deep and then comparing notes with my colleagues on the ISS about our remarkable reusable inner-space outer-spacecraft,” Dr. Sullivan said in a statement released by EYOS Expeditions on Monday.11 June 2020 – Mel Winkler passes away at 78 - https://deadline.com/2020/06/mel-winkler-dead-obituary-oswald-new-batman-adventures-actor-doc-hollywood-1202956911/Mel Winkler, a character actor with numerous TV, film and stage credits as well as being a recognizable voice behind characters on the animated series. Winkler appeared in such films as Doc Hollywood and Devil in a Blue Dress . After a 1969 stint on daytime’s The Doctors, he appeared steadily in episodic TV roles from the 1970s through the early 2000s, including such series as The Cosby Show, The Young Riders, Lois & Clark: The New Adventures of Superman, Star Trek: Voyager, Touched by an Angel, NYPD Blue and The Shield. As a voice actor, he was best known as the voice of the guardian mask Aku Aku in the Crash Bandicoot series, Lucius Fox in The New Batman Adventures and Johnny Snowman in the TV seriesOswald. He passed away in his sleep at his home in Los Angeles, California.11 June 2020 – Queen Elizabeth dials in to first official video call to chat to UK’s carers - https://metro.co.uk/2020/06/11/queen-dials-first-official-video-call-chat-uks-carers-12837809/The Queen has become the latest person to get into the lockdown trend of group video chats, after she made her first official public-facing conference call. Sat comfortably from the Oak Room in Windsor Castle, the 94-year-old monarch dialled in to chat to four carers about the difficulties they have faced during the coronavirus pandemic. The monarch – dressed in a floral dress and pearls – was also joined by her daughter Princess Anne, in the call on June 4 to mark Carers Week. In a video shared by the Royal Family’s Twitter account, the Queen praises the carers and chief executive of the Carers Trust, Gareth Howells, for their ‘extraordinary’ efforts. She can be heard saying: ‘I’m very impressed by what you have achieved already. I’m very glad to have been able to join you today.’ It was a first for the Queen’s long reign and she was the last to join the call and first to leave – a formal etiquette of royal engagements that Buckingham Palace decided to preserve. One carer on the call said it was ‘surreal’ to be sitting in her bedroom while talking to two Royals on a video call.Remembrances9 June 68 AD – Nero - https://en.wikipedia.org/wiki/NeroNero Claudius Caesar Augustus Germanicus; born Lucius Domitius Ahenobarbus was Roman emperor from 54 to 68, the last ruler of the Julio-Claudian dynasty. He was adopted by his great-uncle Claudius and became Claudius' heir and successor. Like Claudius, Nero became emperor with the consent of the Praetorian Guard. Nero's mother, Agrippina the Younger, dominated Nero's early life and decisions until he cast her off and had her killed five years into his reign. Nero's rule is usually associated with tyranny and extravagance. Most Roman sources, such as Suetonius and Cassius Dio, offer overwhelmingly negative assessments of his personality and reign; Tacitus claims that the Roman people thought him compulsive and corrupt. Suetonius tells that many Romans believed that the Great Fire of Rome was instigated by Nero to clear the way for his planned palatial complex, the Domus Aurea. According to Tacitus he was said to have seized Christians as scapegoats for the fire and burned them alive, seemingly motivated not by public justice but by personal cruelty. There is evidence of his popularity among the Roman commoners, especially in the eastern provinces of the Empire, where a popular legend arose that Nero had not died and would return. At least three leaders of short-lived, failed rebellions presented themselves as "Nero reborn" to enlist popular support. He died from suicide outside Rome at the age of 30 with his final words “Too late! This is fidelity!”9 June 1959 – Adolf Windaus - https://en.wikipedia.org/wiki/Adolf_WindausAdolf Otto Reinhold Windaus, German chemist who won a Nobel Prize in Chemistry in 1928 for his work on sterols and their relation to vitamins. He was the doctoral advisor of Adolf Butenandt who also won a Nobel Prize in Chemistry in 1939. Throughout his life, Windaus won many awards including the Goethe Medal, the Pasteur Medal, and the Nobel Prize for Chemistry. In addition to his many accomplishments and discoveries in science, Windaus was also one of the very few German chemists who did not work with the Nazis and openly opposed their regime. As the head of the chemical institute at the University of Göttingen, Windaus personally defended one of his Jewish graduate students from dismissal. Windaus believed that while every man had a moral code, his science was motivated by curiosity, and was not driven by politics, ethics, and applications of his discoveries. This viewpoint caused Windaus to decline to research poison gas during World War I. He was involved in the discovery of the transformation of cholesterol through several steps to vitamin D3 (Cholecalciferol). He gave his patents to Merck and Bayer and they brought out the medical Vigantol in 1927. He died at the age of 82 in Göttingen,West Germany.9 June 1990 – George Beadle - https://en.wikipedia.org/wiki/George_BeadleGeorge Wells Beadle, American geneticist. In 1958 he shared one-half of the Nobel Prize in Physiology or Medicine with Edward Tatum for their discovery of the role of genes in regulating biochemical events within cells. Beadle and Tatum's key experiments involved exposing the bread mold Neurospora crassa to x-rays, causing mutations. In a series of experiments, they showed that these mutations caused changes in specific enzymes involved in metabolic pathways. These experiments led them to propose a direct link between genes and enzymatic reactions, known as the One gene-one enzyme hypothesis. The one gene–one enzyme hypothesis is the idea that genes act through the production of enzymes, with each gene responsible for producing a single enzyme that in turn affects a single step in a metabolic pathway. He died from Alzheimer's disease at the age of 85 in Pomona, California.Famous Birthdays9 June 1640 – Leopold I, Holy Roman Emperor - https://en.wikipedia.org/wiki/Leopold_I,_Holy_Roman_EmperorLeopold I (full name: Leopold Ignaz Joseph Balthasar Felician), Holy Roman Emperor, King of Hungary, Croatia, and Bohemia. The second son of Ferdinand III, Holy Roman Emperor, by his first wife, Maria Anna of Spain, Leopold became heir apparent in 1654 by the death of his elder brother Ferdinand IV. Elected in 1658, Leopold ruled the Holy Roman Empire until his death in 1705, becoming the longest-ruling Habsburg emperor (at 46 years and 9 months). Leopold's reign is known for conflicts with the Ottoman Empire in the east and rivalry with Louis XIV, a contemporary and first cousin, in the west. After more than a decade of warfare, Leopold emerged victorious from the Great Turkish War thanks to the military talents of Prince Eugene of Savoy. By the Treaty of Karlowitz, Leopold recovered almost all of the Kingdom of Hungary, which had fallen under Turkish power in the years after the 1526 Battle of Mohács. Leopold fought three wars against France: the Franco-Dutch War, the Nine Years' War, and the War of the Spanish Succession. In this last, Leopold sought to give his younger son the entire Spanish inheritance, disregarding the will of the late Charles II. Leopold started a war that soon engulfed much of Europe. When peace returned, Austria could not be said to have emerged as triumphant as it had from the war against the Turks. He was born in Vienna.9 June 1843 – Bertha von Suttner - https://en.wikipedia.org/wiki/Bertha_von_SuttnerBertha Felicitas Sophie Freifrau von Suttner also known as Baroness Bertha von Suttner née Countess Kinsky.Austrian-Bohemian pacifist and novelist. In 1905, she became the second female Nobel laureate (after Marie Curie in 1903), the first woman to be awarded the Nobel Peace Prize, and the first Austrian laureate. In 1889 Suttner became a leading figure in the peace movement with the publication of her pacifist novel, Die Waffen nieder! (Lay Down Your Arms!), which made her one of the leading figures of the Austrian peace movement. The book was published in 37 editions and translated into 12 languages. In 1897 she presented Emperor Franz Joseph I of Austria with a list of signatures urging the establishment of an International Court of Justice and took part in the First Hague Convention in 1899 with the help of Theodor Herzl, who paid for her trip as a correspondent of the Zionist newspaper, Die Welt. Suttner's pacifism was influenced by the writings of Immanuel Kant, Henry Thomas Buckle, Herbert Spencer, Charles Darwin and Leo Tolstoy (Tolstoy praised Die Waffen nieder!) conceiving peace as a natural state impaired by the human aberrances of war and militarism. As a result, she argued that a right to peace could be demanded under international law and was necessary in the context of an evolutionary Darwinist conception of history. Suttner was a respected journalist, with one historian describing her as "a most perceptive and adept political commentator". She was born in Prague,Kingdom of Bohemia.9 June 1961 – Michael J. Fox - https://en.wikipedia.org/wiki/Michael_J._FoxMichael Andrew Fox, known professionally as Michael J. Fox, is a Canadian-American, actor, comedian, author, film producer and activist with a film and television career spanning from the 1970s. He starred in the Back to the Future trilogy in which he portrayed Marty McFly. Other notable roles have included his portrayal of Alex P. Keaton on the American sitcom Family Ties and Mike Flaherty on the ABC sitcom Spin City . He has won five Primetime Emmy Awards, four Golden Globe Awards, a Grammy Award, and two Screen Actors Guild Awards. Fox was diagnosed with Parkinson's disease in 1991 at age 29, and disclosed his condition to the public in 1998. He semi-retired from acting in 2000 as the symptoms of the disease worsened. He has since become an advocate for research toward finding a cure, and founded the Michael J. Fox Foundation. Since 1999, Fox has mainly worked as a voice-over actor in films such as Stuart Little and Disney's Atlantis: The Lost Empire. On the CBS TV show The Good Wife, he earned Emmy nominations for three consecutive years for his recurring role as crafty attorney Louis Canning. He has also taken recurring guest roles and cameo appearances in Boston Legal, Scrubs,Curb Your Enthusiasm, Rescue Me, and Designated Survivor. He was appointed an Officer of the Order of Canada in 2010, and was also inducted into Canada's Walk of Fame in 2000. He was born in Edmonton,Alberta.Events of Interest9 June 53 AD – The Roman emperor Nero marries Claudia Octavia. - https://www.mintageworld.com/media/detail/12089-claudia-octavia-and-nero-got-married-/In 53 AD, Octavia was married to her adopted brother Nero after she was legally transferred to another clan. Apparently her stepmother Agrippina had planned this marriage even before her own marriage to Claudius. Nevertheless, Nero succeeded his adoptive father as Emperor, making Octavia Empress. It appears their marriage was loveless and also childless.9 June 68AD – Nero commits suicide, after quoting Homer's Iliad, thus ending the Julio-Claudian dynasty and starting the civil war known as the Year of the Four Emperors - https://www.history.com/topics/ancient-history/nero#section_3Nero failed to respond decisively to a revolt in Gaul, prompting further unrest in Africa and in Spain, where the governor Galba declared himself legate of the Senate and Roman People. Soon the Praetorian Guard declared allegiance to Galba, and the Senate followed suit, declaring Nero an enemy of the people. Nero attempted to flee, but upon learning that his arrest and execution were imminent, he took his own life. Fifty years later, the historian Suetonius reported Nero’s final lament: “What an artist dies in me!” The civil war during the year of the Four Emperors was described by ancient historians as a troubling period. According to Tacitus, this instability was rooted in the fact that emperors could no longer rely on the perceived legitimacy of the imperial bloodline, as Nero and those before him could. Galba began his short reign with the execution of many of Nero's allies. One such notable enemy included Nymphidius Sabinus, who claimed to be the son of Emperor Caligula. The social, military and political upheavals of the period had Empire-wide repercussions, which included the outbreak of the Revolt of the Batavi.9 June 1959 – The USS George Washington is launched. It is the first nuclear-powered ballistic missile submarine. - https://en.wikipedia.org/wiki/USS_George_Washington_(SSBN-598)#Construction_and_launchingThe USS George Washington was launched on 9 June 1959 sponsored by Mrs. Ollie Mae Anderson (née Rawlins), wife of US Treasury Secretary Robert B. Anderson, and commissioned on 30 December 1959 as SSBN-598 with Commander James B. Osborn in command of the Blue crew and Commander John L. From, Jr. in command of the Gold crew. The George Washington was originally scheduled to become the USS Scorpion, but during her construction she was lengthened by the insertion of a 130-foot missile section and finished as a fleet ballistic-missile submarine. The George Washington was commissioned into service in December 1959 and the United States instantly gained the most powerful deterrent force imaginable - a stealth platform with enormous nuclear firepower. Arguably, it can be considered the submarine that has most influenced world events in the 20th Century. In the early 1980s the George Washington had her missile removed and was reclassified as an attack submarine before finally being decommissioned several years later.9 June 1979 – The Ghost Train fire at Luna Park Sydney, Australia, kills seven. - https://en.wikipedia.org/wiki/1979_Sydney_Ghost_Train_fireOn the night of 9 June 1979, a fire broke out inside the ride at approximately 10:15 pm. Due to a combination of low water pressure, under-staffing within the park, and inadequate coverage of the Ghost Train by the park's fire hose system, the fire was able to completely consume the ride.It took an hour to bring the fire under control, but it was extinguished before any significant damage could be done to the adjacent River Caves and Big Dipper. The fire killed six children and one adult, and destroyed the amusement park's ghost train. Inadequate fire-fighting measures and low staffing caused the fire to completely destroy the ride, which was first constructed in 1931, and had been transported from Glenelg, South Australia to Milsons Point, New South Wales during 1934 and 1935. Originally the fire was blamed on electrical faults, but arson by unknown figures has also been claimed. The exact cause of the fire could not be determined by a coronial inquiry. The coroner also ruled that, while the actions of Luna Park's management and staff before and during the fire (in particular their choosing not to follow advice on the installation of a sprinkler system in the ride) breached their duty of care, charges of criminal negligence should not be laid. The case was reopened in 1987: no new findings were made, although the police investigation and coronial inquiry were criticised. The fire forced the closure of Luna Park until 1982, when it reopened under a new name and new owners.IntroArtist – Goblins from MarsSong Title – Super Mario - Overworld Theme (GFM Trap Remix)Song Link -https://www.youtube.com/watch?v=-GNMe6kF0j0&index=4&list=PLHmTsVREU3Ar1AJWkimkl6Pux3R5PB-QJFollow us onFacebook- Page - https://www.facebook.com/NerdsAmalgamated/- Group - https://www.facebook.com/groups/440485136816406/Twitter - https://twitter.com/NAmalgamatedSpotify - https://open.spotify.com/show/6Nux69rftdBeeEXwD8GXrSiTunes -https://itunes.apple.com/au/podcast/top-shelf-nerds/id1347661094RSS -http://www.thatsnotcanonproductions.com/topshelfnerdspodcast?format=rssInstagram - https://www.instagram.com/nerds_amalgamated/Email - Nerds.Amalgamated@gmail.comSupport via Podhero- https://podhero.com/podcast/449127/nerds-amalgamatedRate & Review us on Podchaser - https://www.podchaser.com/podcasts/nerds-amalgamated-623195
Host: Jeff Fox with special guests, Gemma Reguera and Geoffrey Gadd. Gemma Reguera of Michigan State University in East Lansing and Geoffrey Gadd of the University of Dundee in Scotland talk with Jeff Fox about their efforts, to probe some of the electrical properties of materials produced naturally by specific microorganisms. Thus, Geobacter bacteria make protein filaments, called pili, that act as nanowires, transporting 1 billion electrons per second, according to Reguera and her collaborators. Analytic evidence suggests that the electrons move along these proteins by a thermally activated, multistep hopping mechanism, enabling these bacteria to draw electrons from the extracellular milieu. Meanwhile, the fungus Neurospora crassa can transform manganese into a mineral composite with favorable electrochemical properties. The fungal cells produce filaments that take up manganese, which after heat treatment forms structures that have electrochemical properties that are suitable for use in supercapacitors or lithium-ion batteries. The carbonized fungal biomass-mineral composite has excellent cycling stability and retains more than 90% capacity after 200 cycles, according to Gadd and his collaborators. This story was featured in the June 2016 issue of Microbe Magazine. Subscribe to MMP (free) on iTunes, Stitcher, Android, RSS, or by email. You can also listen on your mobile device with the Microbeworld app. Send your microbiology questions and comments (email or audio file) to jfox@asmusa.org Tweet me your questions about this episode or just say hi!
Medizinische Fakultät - Digitale Hochschulschriften der LMU - Teil 16/19
Circadian clocks are endogenous cellular mechanisms that control daily rhythms of physiology and behaviour. The adjustment of the circadian clock to the 24 h period of a day is commonly accomplished by several environmental cues, e.g. temperature, light and nutrition. For one light input pathway the mechanism that synchronises or entrains Neurospora’s clock is supposed to be known. Nevertheless, there are plenty more environmental cues that have an obvious impact on the circadian clock, e.g. temperature. The environmental cue “temperature” was underrepresented in studies about Neurospora’s circadian clock, while several clock studies focused on stationary conditions rather than changing ones. As a result, the functionality and adaptation of circadian clocks were underestimated, and thus new clock components could be overlooked due to screening on constant darkness. It was therefore important to develop a novel strategy in screening mutants that challenged the circadian clock of Neurospora crassa entirely on temperature alternations. A temperature cycle of low amplitude (22° C cold and 27° C warm) and of short period (8 h cold and 8 h warm) applied as Zeitgeber stimulus. A mutant library was created with insertional mutagenesis via electroporation in order to transform a BASTA resistance gene into conidial nuclei. As a consequence, a novel method of rescuing the mutations was established, which combined the process of mapping, partial cloning and PCR and was called Size Selected Fragment Plasmid Rescue or SSFPR in short. During the screening of several hundred mutants among the novel protocol, a known clock gene, frequency, was identified and characterised. The identification of several mutants with altered clock phenotypes has on one hand confirmed the general approach of this study and on the other proved that the greater sensitivity for the temperature screen can bee used to detect mutant phenotypes.
Medizinische Fakultät - Digitale Hochschulschriften der LMU - Teil 14/19
Wed, 16 May 2012 12:00:00 +0100 https://edoc.ub.uni-muenchen.de/14404/ https://edoc.ub.uni-muenchen.de/14404/1/Radic_Tanja.pdf Radic, Tanja ddc:610, ddc:600, Med
Fakultät für Chemie und Pharmazie - Digitale Hochschulschriften der LMU - Teil 03/06
Preface This study is focussed on the structural investigation of large molecular assemblies such as the 26S proteasome and the translocation machinery of the outer mitochondrial membrane. It is divided in two chapters and in both parts the structural and further functional analysis is based on X-ray crystallography. Chapter 1: Structural investigation of Rpn13, the multifunctional adaptor protein of the 26S proteasome The results in chapter 1 reveal that the multifunctional adaptor protein Rpn13 acts as a novel ubiquitin receptor of the 26S proteasome and deliver structural and biophysical details of its interaction with ubiquitin and with other proteasomal subunits. The crystal structure of the ubiquitin binding domain of Rpn13 reveals the molecular architecture of a Pleckstrin Homology (PH) domain and the NMR structure of the complex with ubiquitin shows a novel ubiquitin-binding mode. Additional NMR studies and domain mapping by truncation analysis provide further insights in the domain architecture of Rpn13 and the interaction with its partners Rpn2 and Uch37. Chapter 2: Crystallographic studies of the TOM core complex Chapter 2 presents the purification and crystallization of the mitochondrial protein translocase, the TOM core complex, from Neurospora crassa. Preliminary crystallographic data lead to the determination of space group and cell dimensions. This chapter also describes various experiments to improve the diffraction quality of the crystals and the co-crystallization of TOM core complex with specific monoclonal antibody fragments. Furthermore, expression and refolding of the main component Tom40 is raised as an alternative approach in structural investigation of the TOM complex.
Medizinische Fakultät - Digitale Hochschulschriften der LMU - Teil 07/19
Circadian rhythms influence almost every process in almost every organism. Understanding circadian rhythmicity is a crucial tool to understand many other biological processes. In this study Neurospora crassa, a filamentous fungus, was used to investigate the synchronization of internal time and external light-dark cycles (light entrainment). For physiology experiments a circadian surface was done, taking light-dark cycles of different lengths and varying the ratio of light to dark within each cycle. A highly systematic response could be seen: In cycles shorter than the free running period (FRP), conidiation in N. crassa entrains to dawn, in cycles with a length around the FRP conidiation entrains to midnight, and in cycles longer than the FRP conidiation entrains to dusk. This shows that N.c. entrains to light-dark cycles rather than to be driven by them. Additionally, N.c. entrains even to skeleton photoperiods with characteristics similar to other, higher, organisms. The results allowed to deduct a set of simple and highly systematic rules for entrainment to light, which can now be tested in higher organisms with less experimental effort. After entrainment on the physiology level was shown, the next step in this thesis was to investigate the mechanisms on the molecular level. Here a replication and enhancement of previous results was shown: The quick up-regulation of RNA after lights-on was repeated. Further repeating previous results, protein kinetics were shown to not be uniformly coupled to RNA-kinetics. Enhancing previous results, protein degradation seems to play an important role in entrainment, changing systematically with the varying entrainment protocols. Circadian research has been focused on the free-running period. In the future, entrainment - as an expression of the active process of zeitgeber computation by the circadian clock - will be studied more closely to understand the clock wheels of the circadian system. With this thesis it was shown that even a simple organism like Neurospora crassa entrains to light cycles rather than to be merely driven, and it entrains with characteristics that are comparable to higher organisms. This underlines the usefulness of Neurospora crassa as a model organism in circadian research, and lays the ground for entrainment research in higher organisms.
Fakultät für Biologie - Digitale Hochschulschriften der LMU - Teil 02/06
Die Innenmembran von Mitochondrien besitzt zwei Translokasen für den Import von Proteinen. Der TIM23-Komplex vermittelt die Translokation über und in die Innenmembran, der TIM22-Komplex inseriert Proteine mit mehreren hydrophoben Segmenten in die Innenmembran. Im Rahmen dieser Arbeit sollten Komponenten dieser Translokationsmaschinerien in N. crassa und S. cerevisiae identifiziert und charakterisiert werden. In N. crassa waren zu Beginn der Arbeit im Vergleich zu S. cerevisiae nur wenige Komponenten der TIM-Translokasen bekannt. In der vorliegenden Arbeit wurden die Proteine Tim22, Tim54 und Tim44 in N. crassa identifiziert. Dies wurde entweder durch die Verwendung degenerierter Primer in PCR-Reaktionen mit cDNA aus N. crassa oder durch Durchmustern von Datenbanken erreicht. Die identifizierten Proteine des TIM22-Komplexes wurden bezüglich ihrer Lokalisation und Topologie untersucht. Es handelt sich bei Tim22 um ein Membranprotein der inneren mitochondrialen Membran mit vier Transmembranhelices, das sowohl den N- als auch den C-Terminus in den Intermembranraum exponiert. Tim54 ist ebenso in der inneren mitochondrialen Membran lokalisiert und besitzt nur eine Transmembranhelix. Der größte Teil des Proteins liegt im Intermembranraum, nur wenige Aminosäurereste befinden sich in der mitochondrialen Matrix. Ferner wurde der TIM22-Komplex von N. crassa charakterisiert. Dazu zählten die Untersuchungen der beteiligten Komponenten, der Komplexgröße und der Stabilität des Komplexes. In N. crassa besteht der TIM22-Komplex aus den Komponenten Tim22, Tim54, Tim9 und Tim10, die einen etwa 350 kDa großen Komplex bilden. Für spätere funktionelle Untersuchungen wurde der TIM22-Komplex bzw. Tim22 alleine gereinigt. Beides wurde in Lipidvesikel rekonstituiert. Dieses Verfahren bietet die Grundlage für Untersuchungen in einem definierten experimentellen System, wie Proteine der Carrier-Familie in Lipidmembranen inseriert werden. In S. cerevisiae wurde mit Tim16 eine neue Komponente des mitochondrialen Importmotors des TIM23-Komplexes identifiziert. Dies konnte durch Koreinigung mit einer weiteren Komponente des Importmotors, Tim14, erreicht werden. Die strukturelle Vorhersage für Tim16 ähnelt stark der des J-Proteins Tim14. Tim16 fehlt allerdings das für die Funktion von J-Proteinen essentielle HPD-Motiv. Tim16 ist in der mitochondrialen Matrix lokalisiert und peripher mit der inneren mitochondrialen Membran assoziiert. Durch Depletion von Tim16 wird der Import von Substraten in Mitochondrien beeinträchtigt, die vom mitochondrialen Importmotor abhängig sind. Durch Koimmunopräzipitationen und Quervernetzungsexperimente wurde Tim16 als neue Komponente des mitochondrialen Importmotors der TIM23-Translokase definiert. Funktionell spielt Tim16 eine große Rolle für die Integrität des Importmotors. Die genaue Struktur des Importmotors, seine Regulation und dessen Dynamik im Zuge der Translokation von Präproteinen muss in zukünftigen Experimenten geklärt werden.
Fakultät für Biologie - Digitale Hochschulschriften der LMU - Teil 01/06
Mitochondria are essential cellular organelles of eukaryotic organisms, which import most of their proteinaceous constituents from the cytoplasm. Two mitochondrial membranes contain different translocation machineries which are involved in the import and proper sorting of mitochondrial precursor proteins. The TIM22 translocase in the inner mitochondrial membrane mediates the import of polytopic proteins into this membrane. In addition to the membrane integrated components Tim22 and Tim54, the TIM22 translocase possesses components in the intermembrane space, termed Tim9 and Tim10. In the present study, the tim9 and tim10 genes of the TIM22 translocase of N. crassa were identified. The structural and functional characteristics of the corresponding gene products, the Tim9 and Tim10 proteins, were examined. Tim9 was demonstrated to be an essential protein. The Tim9 and Tim10 proteins were shown to build a 70-80 kDa heterohexameric complex in the mitochondrial intermembrane space. The isolated Tim9•Tim10 complex had the same oligomeric structure as the native one, and it proved fully functional in interacting in vitro with its physiological substrate, the ADP/ATP carrier (AAC). Peptide library screens were performed to determine the structural determinants of the substrates that are recognised by the Tim9•Tim10 complex. Efficient binding to the regions covering residues of the hydrophobic membrane spanning domains and of the connecting hydrophilic loops was observed. In this way, Tim9 and Tim10 proteins interact with their substrates, while the hydrophobic regions of the substrates are still present in the TOM complex and thereby protected from the aqueous environment of the intermembrane space compartment. Furthermore, when enclosed into proteoliposomes containing the reconstituted TOM complex, Tim9•Tim10 complex specifically promoted the translocation of the AAC precursor. Hence, the Tim9•Tim10 complex and the TOM complex are both necessary and sufficient to facilitate translocation of carrier proteins across the outer mitochondrial membrane. Finally, peptide screens and chemical cross-linking experiments were used to identify the precursor of N. crassa Tim23 protein as a novel substrate of the Tim9•Tim10 complex.
Fakultät für Biologie - Digitale Hochschulschriften der LMU - Teil 01/06
Thu, 22 Jul 2004 12:00:00 +0100 https://edoc.ub.uni-muenchen.de/2619/ https://edoc.ub.uni-muenchen.de/2619/1/Hahlen_Katrin.pdf Hahlen, Katrin ddc:570, ddc:500, Fakultät für Biologie
Medizinische Fakultät - Digitale Hochschulschriften der LMU - Teil 02/19
Thu, 29 Apr 2004 12:00:00 +0100 https://edoc.ub.uni-muenchen.de/2215/ https://edoc.ub.uni-muenchen.de/2215/1/Hartel_Michaela.pdf Hartel, Michaela
Fakultät für Biologie - Digitale Hochschulschriften der LMU - Teil 01/06
Mon, 16 Feb 2004 12:00:00 +0100 https://edoc.ub.uni-muenchen.de/2337/ https://edoc.ub.uni-muenchen.de/2337/1/Dragovic_Zdravko.pdf Dragovic, Zdravko ddc:570, ddc:500, Fakultät für Biologie
Medizinische Fakultät - Digitale Hochschulschriften der LMU - Teil 01/19
The data from this study demonstrates for the first time that Neurospora crassa, a circadian model organism, has a photoperiodic clock. The experiments provide the opportunity for further research on photoperiodism. Evidence of this study supports the external coincidence hypothesis that photoperiodism shares the same mechanism with circadian rhythms. The central components of the Neurospora circadian clock, such as FRQ and WC-1, are also essential for photoperiodic responses. The dissociation between frq RNA and FRQ protein in different photoperiods suggests that the transcriptional/ translational regulation is far complicated. The shift of the maximum of conidial production compared to protoperithecia development suggests the different favourite season for the asexual and sexual reproduction of Neurospora crassa. However, there is a difference between circadian rhythm and photoperiodism -- circadian rhythm is endogenous, which remains at constant conditions (DD or LL); in contrast, photoperiodism requires external signals – light and darkness. Further research on photoperiodism of Neurospora must be carried out to study the gene(s) which is/are critical for photoperiodic responses, the molecular mechanism of transcriptional/translational regulation of critical clock components in photoperiods, the generation of the oscillator, and the mechanism which differentiates many outputs of photoperiodic responses.
Fakultät für Biologie - Digitale Hochschulschriften der LMU - Teil 01/06
Konventionelle Kinesine sind Mikrotubuli assoziierte Motorproteine. Sie benutzen die Energie der ATP-Hydrolyse, um gerichtete Bewegungen entlang des Zytoskeletts zu ermöglichen. Tierische konventionelle Kinesine sind aus zwei schweren Ketten und zwei leichte Ketten aufgebaut. Die niederen Organismen, wie Pilze, besitzen dagegen nur die zwei schweren Ketten. Das konventionelle Kinesin des roten Brotschimmels Neurospora crassa (NcKin) bewegt sich wie auch andere Pilzkinesine in vitro im mikroskopischen Gleittest mit Geschwindigkeiten, die etwa drei- bis fünffach höher sind (zwischen 2,0 und 2,6 µm/s), als die der tierischen Kinesine (zwischen 0,2 und 0,8 µm/s). Trotz der hohen Sequenzähnlichkeit von Tier- und Pilzkinesinen, sind spezifische Unterschiede festgestellt worden, vor allem im Halsbereich. Weil es bisher keine zufrieden stellende Erklärung der schnellen Gleitgeschwindigkeit von NcKin gibt, liegt es nahe, in diesen pilzspezifischen Sequenzbereichen die Grundlage hierfür zu vermuten. In dieser Dissertation wurde daher untersucht, welchen Einfluss die einzelnen Kinesin-Domänen auf die Motilität und den ATP-Umsatz haben. Zu diesem Zweck wurden (i) bakterielle Expressionsvektoren hergestellt, die für C-terminal verkürzte Kinesinkonstrukte kodieren. Hierbei wurden zunächst rekombinante Motoren hergestellt, die an den Domänengrenzen endeten, wie sie durch kristallografische Modelle und Sekundärstrukturvorhersagen abgeleitet worden waren. Aufgrund der Ergebnisse an diesen Proteinen wurden weitere C-terminal verkürzte Kinesine konstruiert, die eine genauere funktionelle Kartierung der Scharnierdomäne zum Ziel hatten. Mit diesen Konstrukten wurden kinetische Studien durchgeführt, um ein Gesamtbild von deren ATPase-Aktivität und Prozessivität zu bekommen. Da ähnliche Studien an dem homologen Drosophila Kinesin durchgeführt worden waren, war ein direkter Vergleich zu diesen Vertretern der Tierkinesine möglich. (ii) Um den Beitrag der einzelnen Domänen zur hohen Geschwindigkeit von NcKin zu ermitteln, wurden in einem zweiten Teil der vorliegenden Arbeit gezielt NcKin Domänen in die entsprechenden Bereiche des humanen Kinesins eingeführt, und die entstandenen Chimären auf einen Geschwindigkeitszuwachs getestet.
Medizinische Fakultät - Digitale Hochschulschriften der LMU - Teil 01/19
Das Uhrenprotein Frequency (FRQ) wird in Neurospora crassa nach seiner Synthese phosphoryliert. Die dafür verantwortliche(n) Kinase(n) ist (sind) nicht identifiziert. In der Fruchtfliege Drosophila melanogaster und im Goldhamster Mesocricetus auratus werden Uhrenproteine durch Enzyme aus der Familie der Caseinkinasen 1 phosphoryliert (Doubletime, tau-Genprodukt). Im Rahmen dieser Arbeit konnte die zur humanen Caseinkinase 1ε und zu Doubletime (DBT) aus D. melanogaster homologe CK-1a aus N. crassa kloniert und charakterisiert werden. Es wurde auch eine zweite zur humanen Caseinkinase 1ε homologe Kinase - CK-1b - in N. crassa identifiziert. Das für CK-1a kodierende Gen ist näher mit DBT verwandt. Daher wurde CK-1a in E. coli als Hexahistidinfusionsprotein kloniert, exprimiert und gereinigt. Die gereinigte CK-1a ist in vitro aktiv. Sie phosphoryliert β-Casein und unterliegt einer Autophosphorylierung. FRQ wird in vitro an mindestens zwei Stellen von CK-1a phosphoryliert. Diese Phosphorylierungsstellen liegen wahrscheinlich innerhalb der PEST-Sequenzen von FRQ.
Fakultät für Biologie - Digitale Hochschulschriften der LMU - Teil 01/06
Die Proteintranslokase in der mitochondrialen Außenmembran (TOM-Komplex) ist verantwortlich für die Erkennung von mitochondrialen Präproteinen und deren Translokation über die mitochondriale Außenmembran. Das Ziel dieser Arbeit bestand in der Klonierung und Charakterisierung von bislang nicht identifizierten Komponenten des TOM-Komplexes in Neurospora crassa sowie in der Charakterisierung der Bindung von Präproteinen an den isolierten TOM-Komplex. Dabei wurden folgende Ergebnisse erzielt: Es wurden zwei bislang unbekannte, ca. 6 bzw. 7 kDa grosse Komponenten des Neurospora crassa TOM-Komplexes, Tom6 und Tom7, identifiziert. Deren Gene wurden mittels Durchmusterung einer cDNA-Phagenbibliothek sowie einer sortierten genomischen DNA-Bibliothek identifiziert und sequenziert. Das TOM6-Gen umfasst drei Exons und zwei Introns, während das TOM7-Gen vier Exons und drei Introns enthält. Die Aminosäuresequenzen von Neurospora crassa Tom6 und Tom7 weisen eine hohe Ähnlichkeit zu denen von Tom6 und Tom7 aus anderen Organismen auf. Dabei erstreckt sich der homologe Bereich bei Tom7 über die gesamte Aminosäuresequenz, während er bei Tom6 auf den carboxyterminalen Bereich beschränkt ist. Für beide Proteine wurde jeweils eine potentielle Transmembrandomäne an ihrem Carboxyterminus vorausgesagt. Sowohl Tom6, als auch Tom7 sind integrale Bestandteile des TOM-Core-Komplexes und befinden sich in engem Kontakt zu anderen Komponenten des TOM-Komplexes. Es konnte mit Hilfe von chemischen Quervernetzungsexperimenten gezeigt werden, daß sich Tom6 und Tom7 im TOM-Komplex von Neurospora crassa in direkter räumlicher Nähe zu Tom 40 befinden. Außerdem konnte ein direkter Kontakt zwischen Tom6 und Tom22 nachgewiesen werden, welcher durch Bindung des Präproteins pSu9-DHFR moduliert wird. Ein weiterer Schwerpunkt bei der Charakterisierung von Neurospora crassa Tom6 und Tom7 bestand in der Untersuchung des Imports dieser Proteine in Mitochondrien sowie deren Assemblierung in bereits bestehende TOM-Komplexe. Sowohl Tom6, als auch Tom7 konnten in vitro in Mitochondrien importiert werden und in bereits bestehende TOM-Komplexe assemblieren. Dabei benutzen sie teilweise den generellen Importweg von Präproteinen in Mitochondrien. Der Import von Tom6 umfasst zwei nicht miteinander gekoppelte Schritte. Zunächst findet eine vom Carboxyterminus vermittelte Interaktion mit Komponenten des TOM-Komplexes statt, es folgt die Assemblierung in den TOM-Komplex. Die Assemblierung von Tom6 in den TOM-Komplex setzt eine spezifische Interaktion des aminoterminal an die Transmembrandomäne angrenzenden Bereichs mit anderen TOM-Komponenten voraus. Daneben ist eine Interaktion der Transmembrandomäne von Tom6 mit dem aminoterminal an die Transmembrandomäne angrenzenden Bereich von Tom6 essentiell für die korrekte Assemblierung von Tom6 in den TOM-Komplex. Im Gegensatz zu anderen Außenmembranproteinen kommt bei Neurospora crassa Tom6 positiv geladenen Aminosäuren im an die Transmembrandomäne angrenzenden Bereich keine Bedeutung für den Import zu. Ein weiterer Aspekt der vorliegenden Arbeit bestand in der Untersuchung einiger Aspekte der Bindung des mit Fluoreszenzfarbstoff markierten Präproteins pSu9-DHFR an den isolierten TOM-Komplex unter Anwendung der Fluoreszenzkorrelationsspektroskopie. Die Bindung dieses Präproteins an den TOM-Komplex ist reversibel und wird spezifisch von der Präsequenz vermittelt. Die apparenten Bindungskonstanten betragen 1,3 nM für den TOM-Holokomplex sowie 3,4 nM für den TOM-Core-Komplex. Ein wichtiges Merkmal der Bindung von pSu9-DHFR an den TOM-Komplex sind elektrostatische Wechselwirkungen, da eine Erhöhung der Ionenstärke im Reaktionspuffer eine drastische Verminderung der Bindung zur Folge hatte. Des weiteren geht die Bindung von pSu9-DHFR an den TOM-Komplex einher mit der Entfaltung der DHFR. Eine Verhinderung der Entfaltung der DHFR durch Komplexierung mit Methotrexat führte zu einer stark verminderten Bindung von pSu9-DHFR an den TOM-Komplex.
Fakultät für Biologie - Digitale Hochschulschriften der LMU - Teil 01/06
Die Biogenese von Mitochondrien erfordert den Eintransport cytosolisch synthetisierter Vorstufenproteine über die mitochondriale Außenmembran. Der TOM-Komplex in der Außenmembran erkennt die in die Mitochondrien zu importierenden Vorstufenproteine, bindet sie, ermöglicht den Transfer von zumindest Teilen davon über die mitochondriale Außenmembran und die Integration von Membranproteinen in die Außenmembran. Auf der Grundlage bestehender Untersuchungen des TOM-Holo-Komplexes wurden in dieser Arbeit verschiedene Subkomplexe des TOM-Komplexes aus Neurospora crassa isoliert, biochemisch und biophysikalisch charakterisiert. Zudem wurde eine neue Komponente des TOM-Komplexes identifiziert: Tom5, eine kleine Komponente von etwa 5 kDa mit Sequenzhomologie zu Tom5 von Saccharomces cerevisiae. Der in dieser Arbeit isolierte TOM-Core-Komplex besteht aus den Protein-untereinheiten Tom40, Tom22, Tom7, Tom6 und Tom5; gegenüber dem TOM-Holo-Komplex fehlen ihm die Rezeptorkomponenten Tom70 und Tom20. Der TOM-Core-Komplex weist eine Molekülmasse von ca. 400 kDa und eine Stöchimetrie der Komponenten Tom40 : Tom22 : Tom7 : Tom6 von 8 : 4 : 2 : 1-2 auf. Er kann in vitro präsequenzabhängig bis zu 8 Vorstufen-proteine pro Komplex binden. Elektronenmikroskopische Bilder des TOM-Core- Komplexes zeigen eine symmetrische Doppelringstruktur mit zwei durchgehenden Poren von etwa 2,1 nm Durchmesser. Der TOM-Core-Komplex bildet in Übereinstimmung damit Kanäle mit zwei Leitfähigkeits-niveaus, die zwei Poren entsprechen. Die Bevorzugung von Kationen und die Eigenschaft, durch mitochondriale, positiv geladene Präpeptide selektiv und spezifisch inhibiert zu werden, belegen die Rolle des TOM-Core-Komplexes bei der Proteintranslokation. TOM-Core-Komplex, dessen hydrophile Domänen von Tom22 und den kleinen Toms durch limitierte Proteolyse weitgehend abgedaut wurden, zeigte in den durchgeführten Untersuchungen nahezu identische Binde-, Kanal- und Struktureigenschaften wie der unbehandelte Core-Komplex. Die Grundstruktur der Proteintranslokase der mitochondrialen Außenmembran Zusammenfassung - 132 - kann somit hinreichend durch Tom40 und die membrandurchspannenden Domänen von Tom22, Tom7, Tom6 und Tom5 stabil gebildet werden. Weiterführende Experimente mit isoliertem Tom40 bestätigten dies. So bildet isoliertes Tom40 oligomere Strukturen mit einer mittleren Molekülmasse von ca. 350 kDa. Tom40 zeigte sich in Transmissions-EM-Bildern überwiegend als Einlochpartikel. In Übereinstimmung hiermit weisen die vom Tom40- Komplex gebildeten Kanäle eine Leitfähigkeit von nur der Hälfte der Leitfähigkeit des TOM-Core-Komplexes mit zwei Poren auf. Ein kleiner Teil des isolierten Tom40 bildet Zweilochpartikel. Tom40 ist also in der Lage, die Grundstruktur des TOM-Komplexes zu bilden, wie sie für den TOM-Core-Komplex gefunden wurde. Infrarot- und Circulardichroismus-Spektren von isoliertem Tom40 führen zu dem Schluß, daß ein einzelnes Tom40-Protomer keinen Kanal mit β -Barrel-Struktur bilden kann, sondern daß dazu mehrere Tom40 zusammenwirken müssen.
The novel genetic method of "sheltered RIP" (repeat induced point mutation) was used to generate a Neurospora crassa mutant in which MOM19, a component of the protein import machinery of the mitochondrial outer membrane, can be depleted. Deficiency in MOM19 resulted in a severe growth defect, but the cells remained viable. The number of mitochondrial profiles was not grossly changed, but mutant mitochondria were highly deficient in cristae membranes, cytochromes, and protein synthesis activity. Protein import into isolated mutant mitochondria was decreased by factors of 6 to 30 for most proteins from all suborganellar compartments. Proteins like the ADP/ATP carrier, MOM19, and cytochrome c, whose import into wild-type mitochondria occurs independently of MOM19 became imported normally showing that the reduced import activities are solely caused by a lack of MOM19. Depletion of MOM19 reveals a close functional relationship between MOM19 and MOM22, since loss of MOM19 led to decreased levels of MOM22 and reduced protein import through MOM22. Furthermore, MOM72 does not function as a general backup receptor for MOM19 suggesting that these two proteins have distinct precursor specificities. These findings demonstrate that the import receptor MOM19 fulfills an important role in the biogenesis of mitochondria and that it is essential for the formation of mitochondria competent in respiration and phosphorylation.
The mitochondrial processing peptidase (MPP) of Neurospora crassa is constituted by an alpha- and a beta-subunit. We have purified alpha-MPP after expression in Escherichia coli while beta-MPP was purified from mitochondria. A fusion protein between precytochrome b2 and mouse dihydrofolate reductase was expressed in E. coli, and the purified protein was used as substrate for MPP. Both subunits of MPP are required for processing. MPP removes the matrix targeting signal of cytochrome b2 by a single cut, and the resulting presequence peptide is 31 amino acid residues in length. It acts as a competitive inhibitor of processing but has a approximately 30-fold lower affinity for MPP than the preprotein. Competition assays show that MPP recognizes the COOH- terminal portion of the presequence of cytochrome b2 rather than the NH2-terminal part which has the potential to form an amphiphilic helix. Substitution of arginine in position -2 of the matrix targeting sequence of cytochrome b2 prevents processing but not import of a chimeric precursor. Substitution of the tyrosyl residue in position +1 also prevents processing, indicating that MPP interacts with sequences COOH-terminal to the cleavage site. Non-cleavable preprotein is still recognized by MPP. Our data suggest that processing peptidase and import machinery recognize distinct structural elements in preproteins which, however, can be overlapping.
We have used a technique referred to as ``sheltered RIP'' (repeat induced point mutation) to create mutants of the mom-19 gene of Neurospora crassa, which encodes an import receptor for nuclear encoded mitochondrial precursor proteins. Sheltered RIP permits the isolation of a mutant gene in one nucleus, even if that gene is essential for the survival of the organism, by sheltering the nucleus carrying the mutant gene in a heterokaryon with an unaffected nucleus. Furthermore, the nucleus harboring the RIPed gene contains a selectable marker so that it is possible to shift nuclear ratios in the heterokaryons to a state in which the nucleus containing the RIPed gene predominates in cultures grown under selective conditions. This results in a condition where the target gene product should be present at very suboptimal levels and allows the study of the mutant phenotype. One allele of mom-19 generated by this method contains 44 transitions resulting in 18 amino acid substitutions. When the heterokaryon containing this allele was grown under conditions favoring the RIPed nucleus, no MOM19 protein was detectable in the mitochondria of the strain. Homokaryotic strains containing the RIPed allele exhibit a complex and extremely slow growth phenotype suggesting that the product of the mom-19 gene is important in N. crassa.
Nuclear-encoded proteins destined for mitochondria must cross the outer or both outer and inner membranes to reach their final sub- mitochondrial locations. While the inner membrane can translocate preproteins by itself, it is not known whether the outer membrane also contains an endogenous protein translocation activity which can function independently of the inner membrane. To selectively study the protein transport into and across the outer membrane of Neurospora crassa mitochondria, outer membrane vesicles were isolated which were sealed, in a right-side-out orientation, and virtually free of inner membranes. The vesicles were functional in the insertion and assembly of various outer membrane proteins such as porin, MOM19, and MOM22. Like with intact mitochondria, import into isolated outer membranes was dependent on protease-sensitive surface receptors and led to correct folding and membrane integration. The vesicles were also capable of importing a peripheral component of the inner membrane, cytochrome c heme lyase (CCHL), in a receptor-dependent fashion. Thus, the protein translocation machinery of the outer mitochondrial membrane can function as an independent entity which recognizes, inserts, and translocates mitochondrial preproteins of the outer membrane and the intermembrane space. In contrast, proteins which have to be translocated into or across the inner membrane were only specifically bound to the vesicles, but not imported. This suggests that transport of such proteins involves the participation of components of the intermembrane space and/or the inner membrane, and that in these cases the outer membrane translocation machinery has to act in concert with that of the inner membrane.
Cytochrome c heme lyase (CCHL) catalyses the covalent attachment of the heme group to apocytochrome c during its import into mitochondria. The enzyme is membrane-associated and is located within the intermembrane space. The precursor of CCHL synthesized in vitro was efficiently translocated into isolated mitochondria from Neurospora crassa. The imported CCHL, like the native protein, was correctly localized to the intermembrane space, where it was membrane-bound. As with the majority of mitochondrial precursor proteins, CCHL uses the MOM19-GIP receptor complex in the outer membrane for import. In contrast to proteins taking the general import route, CCHL was imported independently of both ATP-hydrolysis and an electrochemical potential as external energy sources. CCHL which lacks a cleavable signal sequence apparently does not traverse the inner membrane to reach the intermembrane space; rather, it translocates through the outer membrane only. Thus, CCHL represents an example of a novel, 'non-conservative' import pathway into the intermembrane space, thereby also showing that the import apparatus in the outer membrane acts separately from the import machinery in the inner membrane.
Two distinct pathways of sorting and assembly of nuclear-encoded mitochondrial inner membrane proteins are described. In the first pathway, precursor proteins that carry amino-terminal targeting signals are initially translocated via contact sites between both mitochondrial membranes into the mitochondrial matrix. They become proteolytically processed, interact with the 60-kDa heat-shock protein hsp60 in the matrix and are retranslocated to the inner membrane. The sorting of subunit 9 of Neurospora crassa Fo-ATPase has been studied as an example. Fo subunit 9 belongs to that class of nuclear-encoded mitochondrial proteins which are evolutionarily derived from a prokaryotic ancestor according to the endosymbiont hypothesis. We suggest that after import into mitochondria, these proteins follow the ancestral sorting and assembly pathways established in prokäryotes (conservative sorting). On the other hand, ADP/ATP carrier was found not to require interaction with hsp60 for import and assembly. This agrees with previous findings that the ADP/ATP carrier possesses non-amino-terminal targeting signals and uses a different import receptor to other mitochondrial precursor proteins. It is proposed that the ADP/ATP carrier represents a class of mitochondrial inner membrane proteins which do not have a prokaryotic equivalent and thus appear to follow a non-conservative sorting pathway.
Sat, 25 Aug 1990 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7603/1/Neupert_Walter_7603.pdf Tropschug, Maximilian; Neupert, Walter; Müller, Harald A.; Harmey, Matthew A.; Rassow, Joachim
The mitochondrial processing peptidase (MPP) and the processing enhancing protein (PEP) cooperate in the proteolytic cleavage of matrix targeting sequences from nuclear-encoded mitochondrial precursor proteins. We have determined the cDNA sequence of Neurospora MPP after expression cloning. MPP appears to contain two domains of approximately equal size which are separated by a loop-like sequence. Considerable structural similarity exists to the recently sequenced yeast MPP as well as to Neurospora and yeast PEP. Four cysteine residues are conserved in Neurospora and yeast MPP. Inactivation of MPP can be achieved by using sulfhydryl reagents. MPP (but not PEP) depends on the presence of divalent metal ions for activity. Both MPP and PEP are synthesized as precursors containing matrix targeting signals which are processed during import into mitochondria by the mature forms of MPP and PEP.
We have identified the yeast homologue of Neurospora crassa MOM72, the mitochondrial import receptor for the ADP/ATP carrier (AAC), by functional studies and by cDNA sequencing. Mitochondria of a yeast mutant in which the gene for MOM72 was disrupted were impaired in specific binding and import of AAC. Unexpectedly, we found a residual, yet significant import of AAC into mitochondria lacking MOM72 that occurred via the receptor MOM19. We conclude that both MOM72 and MOM19 can direct AAC into mitochondria, albeit with different efficiency. Moreover, the precursor of MOM72 apparently does not require a positively charged sequence at the extreme amino terminus for targeting to mitochondria.
Thu, 28 Dec 1989 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7541/1/Neupert_Walter_7541.pdf Neupert, Walter; Barthelmess, Ilse B.; Tropschug, Maximilian
Passage of precursor proteins through translocation contact sites of mitochondria was investigated by studying the import of a fusion protein consisting of the NH2-terminal 167 amino acids of yeast cytochrome b2 precursor and the complete mouse dihydrofolate reductase. Isolated mitochondria of Neurospora crassa readily imported the fusion protein. In the presence of methotrexate import was halted and a stable intermediate spanning both mitochondrial membranes at translocation contact sites accumulated. The complete dihydrofolate reductase moiety in this intermediate was external to the outer membrane, and the 136 amino acid residues of the cytochrome b2 moiety remaining after cleavage by the matrix processing peptidase spanned both outer and inner membranes. Removal of methotrexate led to import of the intermediate retained at the contact site into the matrix. Thus unfolding at the surface of the outer mitochondrial membrane is a prerequisite for passage through translocation contact sites. The membrane-spanning intermediate was used to estimate the number of translocation sites. Saturation was reached at 70 pmol intermediate per milligram of mitochondrial protein. This amount of translocation intermediates was calculated to occupy approximately 1% of the total surface of the outer membrane. The morphometrically determined area of close contact between outer and inner membranes corresponded to approximately 7% of the total outer membrane surface. Accumulation of the intermediate inhibited the import of other precursor proteins suggesting that different precursor proteins are using common translocation contact sites. We conclude that the machinery for protein translocation into mitochondria is present at contact sites in limited number.
The import of cytochrome c into Neurospora crassa mitochondria was examined at distinct stages in vitro. The precursor protein, apocytochrome c, binds to mitochondria with high affinity and specificity but is not transported completely across the outer membrane in the absence of conversion to holocytochrome c. The bound apocytochrome c is accessible to externally added proteases but at the same time penetrates far enough through the outer membrane to interact with cytochrome c heme lyase. Formation of a complex in which apocytochrome c and cytochrome c heme lyase participate represents the rate-limiting step of cytochrome c import. Conversion from the bound state to holocytochrome c, on the other hand, occurs 10-30-fold faster. Association of apocytochrome c with cytochrome c heme lyase also takes place after solubilizing mitochondria with detergent. We conclude that the bound apocytochrome c, spanning the outer membrane, forms a complex with cytochrome c heme lyase from which it can react further to be converted to holocytochrome c and be translocated completely into the intermembrane space.
Cyclophilin (cyclosporin A-binding protein) has a dual localization in the mitochondria and in the cytosol of Neurospora crassa. The two forms are encoded by a single gene which is transcribed into mRNAs having different lengths and 5' termini (approximately 1 and 0.8 kilobases). The shorter mRNA specifies the cytosolic protein consisting of 179 amino acids. The longer mRNA is translated into a precursor polypeptide with an amino-terminal extension of 44 amino acids which is cleaved in two steps upon entry into the mitochondrial matrix. Neurospora cyclophilin shows about 60% sequence homology to human and bovine cyclophilins.
The nuclear cyt-2-1 mutant of Neurospora crassa is characterized by a gross deficiency of cytochrome c (Bertrand, H., and Collins, R. A. (1978) Mol. Gen. Genet. 166, 1-13). The mutant produces mRNA that can be translated into apocytochrome c in vitro. Apocytochrome c is also synthesized in vivo in cyt-2-1, but it is rapidly degraded and thus does not accumulate in the cytosol. Mitochondria from wild-type cells bind apocytochrome c made in vitro from either wild-type or cyt-2-1 mRNA and convert it to holocytochrome c. This conversion depends on the addition of heme by cytochrome c heme lyase and is coupled to translocation of cytochrome c into the intermembrane space. Mitochondria from the cyt-2-1 strain are deficient in the ability to bind apocytochrome c. They are also completely devoid of cytochrome c heme lyase activity. These defects explain the inability of the cyt-2-1 mutant to convert apocytochrome c to the holo form and to import it into mitochondria.
Transport of nuclear-encoded precursor proteins into mitochondria includes proteolytic cleavage of aminoterminal targeting sequences in the mitochondrial matrix. We have isolated the processing activity from Neurospora crassa. The final preparation (enriched ca. 10,000-fold over cell extracts) consists of two proteins, the matrix processing peptidase (MPP, 57 kd) and a processing enhancing protein (PEP, 52 kd). The two components were isolated as monomers. PEP is about 15-fold more abundant in mitochondria than MPP. It is partly associated with the inner membrane, while MPP is soluble in the matrix. MPP alone has a low processing activity whereas PEP alone has no apparent activity. Upon recombining both, full processing activity is restored. Our data indicate that MPP contains the catalytic site and that PEP has an enhancing function. The mitochondrial processing enzyme appears to represent a new type of “signal peptidase,” different from the bacterial leader peptidase and the signal peptidase of the endoplasmic reticulum.
We have analyzed how translocation intermediates of imported mitochondrial precursor proteins, which span contact sites, interact with the mitochondrial membranes. F1-ATPase subunit β(F1β) was trapped at contact sites by importing it into Neurospora mitochondria in the presence of low levels of nucleoside triphosphates. This F1β translocation intermediate could be extracted from the membranes by treatment with protein denaturants such as alkaline pH or urea. By performing import at low temperatures, the ADP/ATP carrier was accumulated in contact sites of Neurospora mitochondria and cytochrome b2 in contact sites of yeast mitochondria. These translocation intermediates were also extractable from the membranes at alkaline pH. Thus, translocation of precursor proteins across mitochondrial membranes seems to occur through an environment which is accessible to aqueous perturbants. We propose that proteinaceous structures are essential components of a translocation apparatus present in contact sites.
cDNA encoding porin of Neurospora crassa, the major protein component of the outer mitochondrial membrane, was isolated and the nucleotide sequence was determined. The deduced protein sequence consists of 283 amino acids (29,979 daltons) and shows sequence homology of around 43% to yeast porin; however, no significant homology to bacterial porins was apparent. According to secondary structure predictions, mitochondrial porin consists mainly of membrane-spanning sided beta-sheets. Porin was efficiently synthesized in vitro from the cDNA; this allowed us to study in detail its import into mitochondria. Thereby, three characteristics of import were defined: (i) import depended on the presence of nucleoside triphosphates; (ii) involvement of a proteinaceous receptor-like component on the surface of the mitochondria was demonstrated; (iii) insertion into the outer membrane was resolved into at least two distinct steps: specific binding to high-affinity sites and subsequent assembly to the mature form.
Molecular cloning and characterization of cytochrome c cDNA clones of Neurospora crassa wild-type (74A) and a cytochrome c-deficient mutant (cyc1-1) are described. Southern blot analysis of genomic DNA indicates that only one cytochrome c gene exists in the N. crassa genome. The cDNA sequence of the wild-type cytochrome c confirmed the previously determined protein sequence. Sequence analysis of the cyc1-1 cDNA for cytochrome c revealed the presence of a larger open reading frame, owing to the presence of an unspliced intron in the 3' end of the coding region. Splicing of this intron is obviously prevented due to the presence of two base exchanges in the highly conserved intron consensus sequences. Consequently, cyc1-1 synthesizes apocytochrome c with an altered carboxy terminus, 19 amino acids longer than the wild-type cytochrome c, with the final 27 amino acids being of an unrelated sequence. This alteration in the carboxy terminus renders the apocytochrome c incompetent for binding to mitochondria and, consequently, import into mitochondria. Thus, unlike other mitochondrial precursor proteins, where it has been demonstrated that the amino terminus alone is sufficient to target the protein to the mitochondria, an intact carboxy terminus is required for efficient import of apocytochrome c into mitochondria. This is independent confirmation for the view that the import pathway of cytochrome c is unique with respect to all other mitochondrial proteins studied to date.
The import of cytochrome c into mitochondria can be resolved into a number of discrete steps. Here we report on the covalent attachment of heme to apocytochrome c by the enzyme cytochrome c heme lyase in mitochondria from Neurospora crassa. A new method was developed to measure directly the linkage of heme to apocytochrome c. This method is independent of conformational changes in the protein accompanying heme attachment. Tryptic peptides of [35S]cysteine-labelled apocytochrome c, and of enzymatically formed holocytochrome c, were resolved by reverse-phase HPLC. The cysteine-containing peptide to which heme was attached eluted later than the corresponding peptide from apocytochrome c and could be quantified by counting 35S radioactivity as a measure of holocytochrome c formation. Using this procedure, the covalent attachment of heme to apocytochrome c, which is dependent on the enzyme cytochrome c heme lyase, could be measured. Activity required heme (as hemin) and could be reversibly inhibited by the analogue deuterohemin. Holocytochrome c formation was stimulated 5–10-fold by NADH > NADPH > glutathione and was independent of a potential across the inner mitochondrial membrane. NADH was not required for the binding of apocytochrome c to mitochondria and was not involved in the reduction of the cysteine thiols prior to heme attachment. Holocytochrome c formation was also dependent on a cytosolic factor that was necessary for the heme attaching step of cytochrome c import. The factor was a heat-stable, protease-insensitive, low-molecular-mass component of unknown function. Cytochrome c heme lyase appeared to be a soluble protein located in the mitochondrial intermembrane space and was distinct from the previously identified apocytochrome c binding protein having a similar location. A model is presented in which the covalent attachment of heme by cytochrome c heme lyase also plays an essential role in the import pathway of cytochrome c.
Mitochondrial porin, the outer membrane pore-forming protein, was isolated in the presence of detergents and converted into a water- soluble form. This water-soluble porin existed under nondenaturing conditions as a mixture of dimers and oligomers. The proportion of dimers increased with decreasing porin concentration during conversion. Water-soluble porin inserted spontaneously into artificial bilayers as did detergent-solubilized porin. Whereas the latter form had no specific requirements for the lipid composition of the bilayer, water- soluble porin inserted only into membranes containing a sterol, and only in the presence of very low concentrations of Triton X-100 (0.001% w/v) in the solution bathing the bilayer. The channels formed by water- soluble porin were indistinguishable from those formed by detergent- purified porin with respect to specific conductance and voltage dependence of conductance. Water-soluble porin bound tightly in a saturable fashion to isolated mitochondria. The bound form was readily accessible to added protease, indicating its presence on the mitochondrial surface. The number of binding sites was in the range of 5-10 pmol/mg of mitochondrial protein. Water-soluble porin apparently binds to a site on the assembly pathway of the porin precursor, since mitochondria whose binding sites were saturated with the water-soluble form did not import porin precursor synthesized in a cell-free system.
Subunit 9 (dicyclohexylcarbodiimide binding protein, 'proteolipid') of the mitochondrial F1F0-ATPase is a nuclearly coded protein in Neurospora crassa. It is synthesized on free cytoplasmic ribosomes as a larger precursor with an NH2-terminal peptide extension. The peptide extension is cleaved off after transport of the protein into the mitochondria. A processing activity referred to as processing peptidase that cleaves the precursor to subunit 9 and other mitochondrial proteins is described and characterized using a cell-free system. Precursor synthesized in vitro was incubated with extracts of mitochondria. Processing peptidase required Mn2+ for its activity. Localization studies suggested that it is a soluble component of the mitochondrial matrix. The precursor was cleaved in two sequential steps via an intermediate-sized polypeptide. The intermediate form in the processing of subunit 9 was also seen in vivo and upon import of the precursor into isolated mitochondria in vitro. The two cleavage sites in the precursor molecule were determined. The data indicate that: (a) the correct NH2-terminus of the mature protein was generated, (b) the NH2-terminal amino acid of the intermediate-sized polypeptide is isoleucine in position-31. The cleavage sites show similarity of primary structure. It is concluded that processing peptidase removes the peptide extension from the precursor to subunit 9 (and probably other precursors) after translocation of these polypeptides (or the NH2-terminal part of these polypeptides) into the matrix space of mitochondria.
Mild trypsin treatment of isolated Neurospora mitochondria strongly inhibits their ability to bind and import the precursors of several mitochondrial proteins. Evidence is presented for two proteins, the ADP/ATP carrier and the mitochondrial porin, that specific binding of the precursors to the outer surface of the mitochondria is affected by the protease treatment. We suggest that the receptors that mediate the import of these two precursors are proteinaceous. Treatment of mitochondria with elastase also inhibits the binding and import of the ADP/ATP carrier and the porin. In contrast the import of the precursors of subunits 2 and 9 of the mitochondrial proton-translocating ATPase was unaffected by elastase treatment at the concentrations used. We suggest that the import pathways of the latter two proteins are distinct from those of the ADP/ATP carrier and the porin.
Assembly of cytochrome c involves a series of steps: synthesis of apocytochrome c on free ribosomes, specific binding of apocytochrome c to the mitochondrial surface, transfer across the outer membrane, covalent addition of protoheme, refolding of the polypeptide chain, and association of holocytochrome c with its functional sites at the inner membrane. The binding step of apocytochrome c to Neurospora crassa mitochondria was studied by inhibiting the subsequent transfer steps with the heme analogue deuterohemin. The binding sites are highly specific for mitochondrial apocytochromes c. Bound labeled Neurospora apocytochrome c was competitively displaced by unlabeled apocytochrome c from various species. These exhibited different abilities for displacement. Apocytochrome c from Paracoccus denitrificans, the amino-terminal (heme-binding) fragment of Neurospora apocytochrome c, and Neurospora holocytochrome c did not recognize the binding sites. Polylysine did not interfere with apocytochrome c binding. Apocytochrome c is reversibly bound. The binding sites are present in limited number. High-affinity binding sites were present at about 90 pmol/mg of mitochondrial protein. They displayed an association constant of 2.2 X 10(7) M-1. Apocytochrome c was imported into mitochondria and converted to holocytochrome c directly from the binding sites when inhibition by deuterohemin was relieved. We conclude that the apocytochrome c binding sites on mitochondria represent receptors that function in the recognition and import of this precursor by mitochondria.
Isolated yeast mitochondria were able to take up Neurospora ATPase subunit 9 in vitro although the homologous yeast protein is synthesized within the mitochondria and inserted into the membrane from the matrix side (Tzagoloff, A., and Meagher, P. (1972) J. Biol. Chem. 247, 594- 603). The transfer of the protein was dependent on an energized mitochondrial inner membrane. It was accompanied by proteolytic processing of the precursor to the mature protein with the correct NH2 terminus as determined by Edman degradation of the transferred protein. The possibility is discussed that there are common features in the uptake machinery neither specific for one species nor specific for individual precursor proteins in the same species.
The precursor form of Neurospora crassa mitochondrial ADP/ATP carrier synthesized in a cell-free protein-synthesizing system can be imported into isolated mitochondria. If the mitochondrial transmembrane potential is abolished, import does not occur but the precursor binds to the mitochondrial surface. Upon reestablishment of the membrane potential, the bound precursor is imported. This occurs without dissociation of the bound precursor from the mitochondrial surface. We conclude that the binding observed represents an interaction with receptor sites and thus is an early step in the import pathway.
Sat, 1 Jan 1983 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7400/1/7400.pdf Neupert, Walter; Benz, Roland; Freitag, Helmut
Subunit 9 of mitochondrial ATPase (Su9) is synthesized in reticulocyte lysates programmed with Neurospora poly A-RNA, and in a Neurospora cell free system as a precursor with a higher apparent molecular weight than the mature protein (Mr 16,400 vs. 10,500). The RNA which directs the synthesis of Su9 precursor is associated with free polysomes. The precursor occurs as a high molecular weight aggregate in the postribosomal supernatant of reticulocyte lysates. Transfer in vitro of the precursor into isolated mitochondria is demonstrated. This process includes the correct proteolytic cleavage of the precursor to the mature form. After transfer, the protein acquires the following properties of the assembled subunit: it is resistant to added protease, it is soluble in chloroform/methanol, and it can be immunoprecipitated with antibodies to F1-ATPase. The precursor to Su9 is also detected in intact cells after pulse labeling. Processing in vivo takes place posttranslationally. It is inhibited by the uncoupler carbonylcyanide m- chlorophenylhydrazone (CCCP). A hypothetical mechanism is discussed for the intracellular transfer of Su9. It entails synthesis on free polysomes, release of the precursor into the cytosol, recognition by a receptor on the mitochondrial surface, and transfer into the inner mitochondrial membrane, which is accompanied by proteolytic cleavage and which depends on an electrical potential across the inner mitochondrial membrane.
Sat, 1 Jan 1983 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7398/1/7398.pdf Neupert, Walter; Hennig, Bernd ddc:610, Medizin
Sat, 1 Jan 1983 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7399/1/7399.pdf Neupert, Walter; Zimmermann, Richard
The precursor proteins to the subunits of ubiquinol:cytochrome c reductase (cytochrome bc1 complex) of Neurospora crassa were synthesized in a reticulocyte lysate. These precursors were immunoprecipitated with antibodies prepared against the individual subunits and compared to the mature subunits immunoprecipitated or isolated from mitochondria. Most subunits were synthesized as precursors with larger apparent molecular weights (subunits I, 51,500 versus 50,000; subunit II, 47,500 versus 45,000; subunit IV (cytochrome c1), 38,000 versus 31,000; subunit V (Fe-S protein), 28,000 versus 25,000; subunit VII, 12,000 versus 11,500; subunit VIII, 11,600 versus 11,200). Subunit VI (14,000) was synthesized with the same apparent molecular weight. The post-translational transfer of subunits I, IV, V, and VII was studied in an in vitro system employing reticulocyte lysate and isolated mitochondria. The transfer and proteolytic processing of these precursors was found to be dependent on the mitochondrial membrane potential. In the transfer of cytochrome c1, the proteolytic processing appears to take place in two separate steps via an intermediate both in vivo and in vitro. In vivo, the intermediate form accumulated when cells were kept at 8 degrees C and was chased into mature cytochrome c1 at 25 degrees C. Both processing steps were energy- dependent.
Mon, 16 Aug 1982 12:00:00 +0100 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T36-448HVHC-10J&_user=616146&_coverDate=08%2F16%2F1982&_rdoc=16&_fmt=high&_orig=browse&_srch=doc-info(%23toc%234938%231982%23998549998%23268913%23FLP%23display%23Volume)&_cdi=4938&_sort=d&_docanch https://epub.ub.uni-muenchen.de/7397/1/Neupert_Walter_7397.pdf Neupert, Walter; Palmieri, Ferdinando; Benz, Roland; Genchi, Giuseppe; Freitag, Helmut ddc:610, Medizin
The tertiary structures of horse, tuna, Neurospora crassa, horse [Hse65,Leu67]- and horse [Hse65,Leu74]-cytochromes c were studied with high-resolution 1H n.m.r. spectroscopy. The amino acid sequences of these proteins differ at position 46, which is occupied by phenylalanine in the horse proteins but by tyrosine in the remaining two, and at positions 67, 74 and 97, which are all occupied by tyrosine residues in horse and tuna cytochrome c but in the other proteins are substituted by phenylalanine or leucine, though there is only one such substitution per protein. The various aromatic-amino-acid substitutions do not seriously affect the protein structure.
Posttranslational transfer of most precursor proteins into mitochondria is dependent on energization of the mitochondria. Experiments were carried out to determine whether the membrane potential or the intramitochondrial ATP is the immediate energy source. Transfer in vitro of precursors to the ADP/ATP carrier and to ATPase subunit 9 into isolated Neurospora mitochondria was investigated. Under conditions where the level of intramitochondrial ATP was high and the membrane potential was dissipated, import and processing of these precursor proteins did not take place. On the other hand, precursors were taken up and processed when the intramitochondrial ATP level was low, but the membrane potential was not dissipated. We conclude that a membrane potential is involved in the import of those mitochondrial precursor proteins which require energy for intracellular translocation
Sat, 1 May 1982 12:00:00 +0100 http://www3.interscience.wiley.com/journal/119560512/abstract https://epub.ub.uni-muenchen.de/7396/1/Neupert_Walter_7396.pdf Neupert, Walter; Miller, Fritz; Janes, Michael; Zimmermann, Richard; Desel, Herbert ddc:610, Medizin
The major protein of the outer mitochondrial membrane of Neurospora was purified. On dodecylsulfate-containing gels it displayed a single bend with an apparent molecular weight of 31000. reconstitution experiments with artifical lipid bilayers showed that this protein forms pores. Pore conductance was dependent on the voltage across the membrane. The protein inserted into the membrane in an oriented fashion, the membrane current being dependent on the sign of the voltage. Single pore conductance was 5nS, suggesting a diameter of 2nm of the open pore. This mitochondrial protein shows a number of similarities to the outer membrane porins of gram-negative bacteria.
Transport of apocytochrome c across the outer mitochondrial membrane and conversion to holocytochrome c were studied in vitro. Apocytochrome c was synthesized in a cell-free homogenate from Neurospora crassa. Transfer in vitro was accomplished in a reconstituted system consisting of the postribosomal supernatant of the cell-free homogenate and of isolated and purified mitochondria from Neurospora. The reconstituted system has the following characteristics: * 1. Apocytochrome c is rapidly cleared from the supernatant and holocytochrome c appears in the mitochondria with the same kinetics. More than 80% of the apocytochrome c employed is converted to holocytochrome c. No transient accumulation of apocytochrome c is found in mitochondria. * 2. The heme group becomes covalently linked to apocytochrome c in the reconstituted system as demonstrated by analysis of tryptic peptide maps of the apoprotein and holoprotein. * 3. Deuterohemin added to the reconstituted system but not deuteroporphyrin inhibits the formation of holocytochrome c. This inhibition is reversed by protohemin. * 4. In the presence of deuterohemin about half of the apocytochrome c remains in the supernatant; the other half becomes associated with the mitochondria. The latter portion is tightly bound and is specifically released upon incubation of the mitochondria with excess apocytochrome c. It is converted to holocytochrome c after addition of protohemin. We conclude from these observations that apocytochrome c is transported across the outer mitochondrial membrane via receptor sites. In the presence of the heme analogue deuterohemin, binding to the receptor sites on the cytoplasmic surface of the outer mitochondrial membrane still takes place but translocation does not. The latter step is apparently coupled to the covalent linkage of the heme group. We suggest that the formation of the thioether bonds between apoprotein and heme is catalysed by an enzyme in the intermembrane space and that deuterohemin can compete with protohemin for binding to the enzyme. Finally, the data indicate that it is the heme group and not the porphyrin group which is coupled to the apoprotein.
Transport of mitochondrial precursor proteins into mitochondria of Neurospora crassa was studied in a cellfree reconstituted system. Precursors were synthesized in a reticulocyte lysate programmed with Neurospora mRNA and transported into isolated mitochondria in the absence of protein synthesis. Uptake of the following precursors was investigated: apocytochrome c, ADP/ATP carrier and subunit 9 of the oligomycin-sensitive ATPase. Addition of high concentrations of unlabelled chemically prepared apocytochrome c (1–10 μM) inhibited the appearance in the mitochondrial of labelled cytochrome c synthesized in vitro because the unlabelled protein dilutes the labelled one and because the translocation system has a limited capacity [apparent V is 1–3 pmol × min−1× (mg mitochondrial protein)−1]. Concentrations of added apocytochrome c exceeding the concentrations of precursor proteins synthesized in vitro by a factor of about 104 did not inhibit the transfer of ADP/ATP carrier or ATPase subunit 9 into mitochondria. Carbonylcyanide m-chlorophenylhydrazone, an uncoupler of oxidative phosphorylation, inhibited transfer in vitro of ADP/ATP carrier and of ATPase subunit 9, but not of cytochrome c. These findings suggest that cytochrome c and the other two proteins have different import pathways into mitochondria. It can be inferred from the data presented that different 'receptors' on the mitochondrial surface mediate the specific recognition of precursor proteins by mitochondria as a first step in the transport process.
Biosynthesis of isocitrate lyase, a tetrameric enzyme of the glyoxysomal matrix, was studied in Neurospora crassa, in which the formation of glyoxysomes was induced by a substitution of sucrose medium by acetate medium. * 1. Translation of Neurospora mRNA in reticulocyte lysates yields a product which has the same apparent molecular weight as the subunit of the functional enzyme. Using N-formyl[35S]methionyl tRNAMetf as a label, the translation product shows the same apparent size which indicates that the amino terminus has no additional 'signal'-type sequence. * 2. Read-out systems employing free and membrane-bound polysomes show that only free ribosomes are active in the synthesis of isocitrate lyase. * 3. Isocitrate lyase synthesized in reticulocyte lysate is released into the supernatant and is soluble in a monomeric form. It interacts with Triton X-100 to form mixed micells in contrast to the functional tetrameric form. * 4. Transfer of isocitrate lyase synthesized in vitro into isolated glyoxysomes is suggested by results of experiments in which supernatants from reticulocyte lysates are incubated with a particle fraction isolated from acetate-grown cells. No transfer occurs when particles from non-induced cells are employed. Resistance to added proteinase is used as a criterion for transmembrane transfer. The data support a post-translational transfer mechanism for isocitrate lyase. They suggest that isocitrate lyase passes through a cytosolic precurscr pool as a monomer and is transferred into glyoxysomes.
The mitochondrial ADP/ATP carrier is an integral transmembrane protein of the inner membrane. It is synthesized on cytoplasmic ribosomes. Kinetic data suggested that this protein is transferred into mitochondria in a posttranslational manner. The following results provide further evidence for such a mechanism and provide information on its details. 1. In homologous and heterologous translation systems the newly synthesized ADP/ATP carrier protein is present in the postribosomal supernatant. 2. Analysis by density gradient centrifugation and gel filtration shows, that the ADP/ATP carrier molecules in the postribosomal fraction are present as soluble complexes with apparent molecular weights of about 120000 and 500000 or larger. The carrier binds detergents such as Triton X-100 and deoxycholate forming mixed micelles with molecular weights of about 200000–400000. 3. Incubation of a postribosomal supernatant of a reticulocyte lysate containing newly synthesized ADP/ATP carrier with mitochondria isolated from Neurospora spheroplasts results in efficient transfer of the carrier into mitochondria. About 20–30% of the transferred carrier are resistant to proteinase in whole mitochondria. The authentic mature protein is also largely resistant to proteinase in whole mitochondria and sensitive after lysis of mitochondria with detergent. Integrity of mitochondria is a prerequisite for translocation into proteinase resistant position. 4. The transfer in vitro into a proteinase-resistant form is inhibited by the uncoupler carbonyl-cyanide m-chlorophenylhydrazone but not the proteinase-sensitive binding. These observations suggest that the posttranslational transfer of ADP/ATP carrier occurs via the cytosolic space through a soluble oligomeric precursor form. This precursor is taken up by intact mitochondria into an integral position in the membrane. These findings are considered to be of general importance for the intracellular transfer of insoluble membrane proteins. They support the view that such proteins can exist in a water-soluble form its precursors and upon integration into the membrane undergo a conformational change. Uptake into the membrane may involve the cleavage of an additional sequence in some proteins, but this appears not to be a prerequisite as demonstrated by the ADP/ATP carrier protein.
Sat, 1 Dec 1979 12:00:00 +0100 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T36-44DSR1F-B5&_user=616146&_coverDate=12%2F15%2F1979&_rdoc=18&_fmt=high&_orig=browse&_srch=doc-info(%23toc%234938%231979%23998919997%23272157%23FLP%23display%23Volume)&_cdi=4938&_sort=d&_docancho https://epub.ub.uni-muenchen.de/7342/1/Neupert_Walter_7342.pdf Neupert, Walter; Harmey, Matthew A. ddc:610, Medizin
ADP/ATP carrier protein was synthesized in heterologous cell-free systems programmed with Neurospora poly(A)-containing RNA and homologous cell-free systems from Neurospora. The apparent molecular weight of the product obtained in vitro was the same as that of the authentic mitochondrial protein. The primary translation product obtained in reticulocyte lysates starts with formylmethionine when formylated initiator methionyl-tRNA (fMet-tRNAfMet) was present. The product synthesized in vitro was released from the ribosomes into the postribosomal supernatant. The evidence presented indicates that the ADP/ATP carrier is synthesized as a polypeptide with the same molecular weight as the mature monomeric protein and does not carry an additional sequence.
Mon, 1 Jan 1979 12:00:00 +0100 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7CV2-4B3VKS2-98&_user=616146&_coverDate=12%2F31%2F1979&_rdoc=12&_fmt=high&_orig=browse&_srch=doc-info(%23toc%2318066%231979%23999439999%23472572%23FLA%23display%23Volume)&_cdi=18066&_sort=d&_docanc https://epub.ub.uni-muenchen.de/7321/1/7321.pdf Hallermayer, Gerhard; Michel, Rainer; Miller, Fritz; Neupert, Walter ddc:610, Medizin
# 1. Precipitating antibodies specific for apocytochrome c and holocytochrome c, respectively, were employed to study synthesis and intracellular transport of cytochrome c in Neurospora in vitro. # 2. Apocytochrome c as well as holocytochrome c were found to be synthesized in a cell-free homogenate. A precursor product relationship between the two components is suggested by kinetic experiments. # 3. Apocytochrome c synthesized in vitro was found in the post-ribosomal fraction and not in the mitochondrial fraction, whereas holocytochrome c synthesized in vitro was mainly detected in the mitochondrial fraction. A precursor product relationship between postribosomal apocytochrome c and mitochondrial holocytochrome c is indicated by the labelling data. In the microsomal fraction both apocytochrome c and holocytochrome c were found in low amounts. Their labelling kinetics do not suggest a precursor role of microsomal apocytochrome c or holocytochrome c. # 4. Formation of holocytochrome c from apocytochrome c was observed when postribosomal supernatant containing apocytochrome c synthesized in vitro was incubated with isolated mitochondria, but not when incubated in the absence of mitochondria. The cytochrome c formed under these conditions was detected in the mitochondria. # 5. Conversion of labelled apocytochrome c synthesized in vitro to holocytochrome c during incubation of a postribosomal supernatant with isolated mitochondria was inhibited when excess isolated apocytochrome c, but not when holocytochrome c was added. # 6. The data presented are interpreted to show that apocytochrome c is synthesized on cytoplasmic ribosomes and released into the supernatant. It is suggested that apocytochrome c migrates to the inner mitochondrial membrane, where the heme group is covalently linked to the apoprotein. The hypothesis is put forward that the concomitant change in conformation leads to trapping of holocytochrome c in the membrane. The probles of permeability of the outer mitochondrial membrane to apocytochrome c and the site and nature of the reaction by which the heme group is linked to the apoprotein are discussed.
Sun, 1 Jan 1978 12:00:00 +0100 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7CV2-4B42H29-B4&_user=616146&_coverDate=12%2F31%2F1979&_rdoc=21&_fmt=high&_orig=browse&_srch=doc-info(%23toc%2318066%231979%23999449999%23472657%23FLA%23display%23Volume)&_cdi=18066&_sort=d&_docanc https://epub.ub.uni-muenchen.de/7323/1/7323.pdf Weiss, Hanns; Neupert, Walter; Sebald, Walter ddc:610, Medizin
Synthesis and transport of mitochondrial proteins were followed in a cell-free homogenate of Neurospora crassa in which mitochondrial translation was inhibited. Proteins synthesized on cytoplasmic ribosomes are transferred into the mitochondrial fraction. The relative amounts of proteins which are transferred in vitro are comparable to those transferred in whole cells. Cycloheximide and puromycin inhibit the synthesis of mitochondrial proteins but not their transfer into mitochondria. The transfer of immunoprecipitable mitochondrial proteins was demonstrated for matrix proteins, carboxyatractyloside-binding protein and cytochrome c. Import of proteins into mitochondria exhibits a degree of specificity. The transport mechanism differentiates between newly synthesized proteins and preexistent mitochondrial proteins, at least in the case of matrix proteins. In the cell-free homogenate membrane-bound ribosomes are more active in the synthesis of mitochondrial proteins than are free ribosomes. The finished translation products appear to be released from the membrane-bound ribosomes into the cytosol rather than into the membrane vesicles. The results suggest that the transport of cytoplasmically synthesized mitochondrial proteins is essentially independent of cytoplasmic translation; that cytoplasmically synthesized mitochondrial proteins exist in an extramitochondrial pool prior to import; that the site of this pool is the cytosol for at least some of the mitochondrial proteins; and that the precursors in the extramitochondrial pool differ in structure or conformation from the functional proteins in the mitochondria.
The transport of cytoplasmically synthesized mitochondrial proteins was investigated in whole cells of Neurospora crassa, using dual labelling and immunological techniques. In pulse and pulse-chase labelling experiments the mitochondrial proteins accumulate label. The appearance of label in mitochondrial protein shows a lag relative to total cellular protein, ribosomal, microsomal and cytosolic proteins. The delayed appearance of label was also found in immunoprecipitated mitochondrial matrix proteins, mitochondrial ribosomal proteins, mitochondrial carboxyatractyloside-binding protein and cytochrome c. Individual mitochondrial proteins exhibit different labelling kinetics. Cycloheximide inhibition of translation does not prevent import of proteins into the mitochondria. Mitochondrial matrix proteins labelled in pulse and pulse-chase experiments can first be detected in the cytosol fraction and subsequently in the mitochondria. The cytosol matrix proteins and those in the mitochondria show a precursor-product type relationship. The results suggest that newly synthesized mitochondrial proteins exist in an extra-mitochondrial pool from which they are imported into the mitochondria.
The effect of the inclusion of EDTA and of heparin, in media used in the isolation of mitochondria, on the mitochindrial previous termribosomenext term has been investigated. 1. 1. Mitochondria isolated from previous termNeurospora crassanext term in the presence of EDTA contain only a single type of monomeric previous termribosome, viz. 73next term S. 2. 2. Mitochondria isolated in the presence of Mg2+ contain both 79-S and previous term73next term-S monomeric previous termribosomes.next term The heterogeneity of the previous termribosomesnext term was demonstrated by (a) ultracentrifugation on sucrose gradients, (b) electron microscopy, (c) immunoprecipitation with antibodies against mitochondrial previous term73next term-S and 79-S cytoplasmic previous termribosomes,next term (d) gel electrophoresis of high and low molecular weight RNAs. 3. 3. Inclusion of heparin in all media used for the isolation of mitochondria and previous termribosomesnext term resulted in (a) dissociation of previous term73next term-S mitochondrial previous termribosomesnext term into 50-S and 37-S subunits; (b) stabilization of 79-S cytoplasmic previous termribosomes;next term (c) in the case of mitochondria isolated in the presence of Mg2+ containing both previous term73next term-S and 79-S previous termribosomes,next term heparin causes the selective dissociation of the previous term73next term S monosome to yield previous termribosomesnext term containing only a single monomeric previous termribosomenext term type, viz. 79 S. 4. 4. It is concluded that (a) the 79-S previous termribosomesnext term present in mitochondria isolated in the presence of Mg2+ are contaminating cytoplasmic previous termribosomes,next term (b) the previous term73next term-S previous termribosomesnext term are the real functional mitochondrial previous termribosomes of Neurospora crassanext term.
Thu, 1 Jan 1976 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7296/1/7296.pdf Werner, Sigurd; Neupert, Walter; Rücker, Axel von ddc:610, Medizin
Thu, 1 Jan 1976 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7304/1/7304.pdf Neupert, Walter; Miller, Fritz; Harmey, Matthew A.; Hallermayer, Gerhard; Michel, Rainer ddc:610
Thu, 1 Jan 1976 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7306/1/7306.pdf Wachter, Elmar; Neupert, Walter; Michel, Rainer; Machleidt, W.
Thu, 1 Jan 1976 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7307/1/7307.pdf Rücker, Axel von; Neupert, Walter
Wed, 1 Jan 1975 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7293/1/7293.pdf Neupert, Walter; Hartmann, A.; Liebl, A.; Michel, Rainer
Wed, 1 Jan 1975 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7284/1/7284.pdf Neupert, Walter; Otto, J.; Machleidt, W.; Liebl, A.; Michel, Rainer
Tue, 15 Oct 1974 12:00:00 +0100 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T36-447P02V-2S&_user=616146&_coverDate=10%2F15%2F1974&_rdoc=22&_fmt=high&_orig=browse&_srch=doc-info(%23toc%234938%231974%23999529997%23268635%23FLP%23display%23Volume)&_cdi=4938&_sort=d&_docancho https://epub.ub.uni-muenchen.de/7275/1/Neupert_Walter_7275.pdf Neupert, Walter; Werner, Sigurd; Rücker, Axel von
Wed, 1 May 1974 12:00:00 +0100 http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6T36-44W4WF3-3F&_user=616146&_coverDate=05%2F01%2F1974&_rdoc=21&_fmt=high&_orig=browse&_srch=doc-info(%23toc%234938%231974%23999589997%23280309%23FLP%23display%23Volume)&_cdi=4938&_sort=d&_docancho https://epub.ub.uni-muenchen.de/7268/1/Neupert_Walter_7268.pdf Neupert, Walter; Hallermayer, Gerhard
Tue, 1 Jan 1974 12:00:00 +0100 http://www.springerlink.com/content/h6t76u288422wm74/?p=1c84c9fab9fa4ff6abfeeb3ba5a8fd2f&pi=9 https://epub.ub.uni-muenchen.de/7282/1/Neupert_Walter_7282.pdf Neupert, Walter; Klingmüller, Walter; Wagenmann, Margit ddc:610, Medizin
Three different cell types of Neurospora crassa deficient in cytochrome oxidase were studied: the nuclear mutant cni-1, the cytoplasmic mutant mi-1 and copper-depleted wild-type cells. * 1. The enzyme-deficient cells have retained a functioning mitochondrial protein synthesis. It accounted for 12–16% of the total protein synthesis of the cell. However, the analysis of mitochondrial translation products by gel electrophoresis revealed that different amounts of individual membrane proteins were synthesized. Especially mutant cni-1 produced large amounts of a small molecular weight translation product, which is barely detectable in wild-type. * 2. Mitochondrial preparations of cytochrome-oxidase-deficient cells were examined for precursors of cytochrome oxidase. The presence of polypeptide components of cytochrome oxidase in the mitochondria was established with specific antibodies. On the other hand, no significant amounts of heme a could be extracted. * 3. Radioactively labelled components of cytochrome oxidase were isolated by immunoprecipitation and analysed by gel electrophoresis. All three cell types contained the enzyme components 4–7, which are translated on cytoplasmic ribosomes. The mitochondrially synthesized components 1–3 were present in mi-1 mutant and in copper-depleted wild-type cells. In contrast, components 2 and 3 were not detectable in the nuclear mutant cni-1. Both relative and absolute amounts of these polypeptides in the enzyme-deficient cells were quite different from those in wild-type cells. * 4. The components of cytochrome oxidase found in the enzyme-deficient cells were tightly associated with the mitochondrial membranes. * 5. Processes, which affect and may control the production of enzyme precursors or their assembly to a functional cytochrome oxidase are discussed.
Tue, 1 Jan 1974 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7267/1/7267.pdf Neupert, Walter; Hallermayer, Gerhard ddc
Tue, 1 Jan 1974 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7266/1/7266.pdf Neupert, Walter; Rücker, Axel von ddc:610, Mediz
# 1. Nascent translation products on mitochondrial ribosomes were selectively labeled in vivo in the presence of cycloheximide with radioactive leucine. They were isolated together with the ribosomes. # 2. The labeled polypeptides show a high tendency to aggregate and can only be kept in solution in the presence of detergents such as dodecylsulfate. Also, mitochondrial ribosomes carrying nascent peptide chains easily form aggregates. # 3. The polypeptides adhering to mitochondrial monomeric ribosomes differ from those adhering to polymeric ribosomes. Gel electrophoresis in the presence if dodecylsulfate shows for the peptidyl transfer RNA products at the monomer, an apparent molecular weight of 27000. After removing the transfer RNA, an apparent molecular weight of less than 10000 is registered. The peptides adhering to mitochondrial polymeric ribosomes display a broad range of apparent molecular weights. In contrast, translation products associated with cytoplasmic monomeric and polymeric ribosomes all show quite disperse molecular weights. # 4. Using gel-chromatographic analysis no difference in the elution characteristics between translation products associated with mitochondrial monomeric and polymeric ribosomes was found. In both cases apparent molecular weights of about 11000 were obtained. # 5. A kinetic study of the appearance of mitochondrial translation products in the mitochondrial membrane was carried out. A conversion process of products with lower apparent molecular weights to those with higher apparent molecular weights is observed. This suggests that mitochondrial ribosomes form polypeptides which are modified during or after integration into the membrane. # 6. The hypothesis is discussed that mitochondria possess their own system of transcription and translation, because the hydrophobic nature of the translation products makes it necessary that they are formed inside the inner mitochondrial membrane, into which they are integrated.
Mon, 1 Jan 1973 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7264/1/7264.pdf Neupert, Walter; Michel, Rainer; Rücker, Axel von
Sat, 1 Jan 1972 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7184/1/7184.pdf Pfaller, A.; Ludwig, George D.; Neupert, Walter
Outer and inner membranes of Neurospora crassa mitochondria were separated by the combined swelling, shrinking, sonication procedure. Membranes were characterized by electron microscopy and by marker enzyme activities. A red carotenoid pigment was found to be concentrated in the outer membrane. The inner mitochondrial membrane was resolved into about 20 protein bands on polyacrylamide gel electrophoresis, whereas the outer membrane shows essentially one single protein band. Only negligible incorporation of radioactive amino acids occurs into outer membrane when isolated mitochondria are synthesizing polypeptide chains. In agreement with this observation labeling of outer membrane protein is almost entirely blocked, when whole Neurospora cells are incubated with radioactive amino acids in the presence of cycloheximide, an inhibitor of cytoplasmic protein synthesis. Finally, the essential electrophoretic protein band from outer membrane does not become labeled when mitochondria are incubated with radioactive amino acids either in vitro or in vivo in the presence of cycloheximide. It is concluded that the vast majority, if not all, of the outer membrane protein is synthesized by the cytoplasmic system and that polypeptide chains formed by the mitochondrial ribosomes are integrated into the inner mitochondrial membrane.
Fri, 1 Jan 1971 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7179/1/7179.pdf Pfaller, A.; Massinger, P.; Neupert, Walter
Thu, 1 Jan 1970 12:00:00 +0100 https://epub.ub.uni-muenchen.de/7174/1/7174.pdf Neupert, Walter
Radioactive amino acids were incorporated in vivo into Neurospora crassa cells, and the mitochondrial ribosomes were isolated. The incorporation of radioactivity into the proteins of these ribosomes was inhibited by cycloheximide, but not by chloramphenicol. It is therefore concluded that these proteins are synthesized on the cycloheximide sensitive and chloramphenicol insensitive cytoplasmic ribosomes.
Radioactive amino acids were incorporated into isolated mitochondria from Neurospora crassa. Then the mitochondrial ribosomes were isolated and submitted to density gradient centrifugation. A preferential labelling of polysomes was observed. However, when the mitochondrial suspension was treated with puromycin after amino acid incorporation, no radioactivity could be detected in either the monosomes or the polysomes. The conclusion is drawn that isolated mitochondria under these conditions do not incorporate significant amounts of amino acids into proteins of their ribosomes.